Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70518 | Canola | endoplasmic reticulum, golgi, plasma membrane | 66.67 | 94.4 |
| CDY62148 | Canola | plasma membrane | 76.84 | 92.2 |
| CDY62149 | Canola | extracellular, golgi | 43.79 | 90.12 |
| Bra036730.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 76.55 | 84.16 |
| CDX85978 | Canola | cytosol, peroxisome, plasma membrane | 76.84 | 83.18 |
| Bra040009.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 77.4 | 78.96 |
| CDY44965 | Canola | cytosol, peroxisome, plasma membrane | 77.97 | 77.75 |
| AT4G10430.1 | Thale cress | cytosol, peroxisome, plasma membrane | 70.62 | 72.05 |
| CDX93786 | Canola | cytosol, peroxisome, plasma membrane | 59.89 | 71.86 |
| KRG93048 | Soybean | cytosol, peroxisome, plasma membrane | 66.67 | 66.67 |
| KRH36308 | Soybean | cytosol, peroxisome, plasma membrane | 66.38 | 66.38 |
| VIT_02s0025g03210.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 67.51 | 66.2 |
| Solyc03g096810.2.1 | Tomato | nucleus | 62.43 | 59.57 |
| Zm00001d024602_P001 | Maize | plasma membrane | 61.86 | 59.51 |
| EES14557 | Sorghum | peroxisome | 62.43 | 59.41 |
| Os08t0152800-00 | Rice | peroxisome | 60.17 | 59.17 |
| PGSC0003DMT400001473 | Potato | cytosol, peroxisome, plasma membrane | 61.58 | 58.76 |
| HORVU7Hr1G071960.1 | Barley | nucleus, peroxisome, plasma membrane | 60.17 | 58.68 |
| Zm00001d049571_P001 | Maize | peroxisome | 61.02 | 58.06 |
| TraesCS7B01G203600.1 | Wheat | nucleus, peroxisome, plasma membrane | 59.6 | 57.81 |
| TraesCS7D01G298800.1 | Wheat | nucleus, peroxisome, plasma membrane | 59.6 | 57.81 |
| Os02t0106800-01 | Rice | plasma membrane | 57.63 | 57.63 |
| TraesCS7A01G303400.1 | Wheat | nucleus, peroxisome, plasma membrane | 59.32 | 57.53 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 59.32 | 57.07 |
| EES04336 | Sorghum | cytosol | 56.21 | 56.21 |
| TraesCS6D01G028000.1 | Wheat | nucleus, peroxisome, plasma membrane | 57.34 | 56.08 |
| TraesCS6A01G024600.1 | Wheat | nucleus, peroxisome, plasma membrane | 57.06 | 55.8 |
| HORVU6Hr1G004260.1 | Barley | cytosol | 55.65 | 53.39 |
| GSMUA_Achr2P17850_001 | Banana | plasma membrane | 61.3 | 52.67 |
| Zm00001d014951_P002 | Maize | cytosol | 49.44 | 48.61 |
| GSMUA_AchrUn_... | Banana | cytosol | 12.43 | 40.37 |
Protein Annotations
| ArrayExpress:AT1G33230 | EnsemblPlants:AT1G33230.2 | EnsemblPlantsGene:AT1G33230 | EntrezGene:840217 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:TMPIT | PANTHER:PTHR21433 | PANTHER:PTHR21433:SF0 | PFAM:PF07851 | ProteinID:ANM58292.1 |
| RefSeq:AT1G33230 | RefSeq:AT1G33230-TAIR-G | RefSeq:NP_001320738.1 | SEG:seg | TAIR:AT1G33230 | TMHMM:TMhelix |
| UniParc:UPI0008494C26 | UniProt:A0A1P8ANQ6 | MapMan:35.2 | : | : | : |
Description
TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
Coordinates
chr1:+:12046379..12050066
Molecular Weight (calculated)
40574.8 Da
IEP (calculated)
10.382
GRAVY (calculated)
0.333
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLPHPSSLL LLKKSFLSVT EPPSLTHQSA VFILLLPLTN ISIPSFSKRL IFYNLSLCLC FSISPILNFV LLLQLEEDLQ RARCMLADGD TSSFLPSKPQ
101: GRFVRMFLGP VNVRASRKDI QLKVKEEYNS YRDRTALLFL VFPAILLTLR SYVWDGCLPA FPVQLYQAWL LFLYAGLVMR ENILRANGSD IRSWWLYHHY
201: FAMAMSLVSL TWEIKGQPNC VQKQKGVRLF LQWAMMQGVA MLLQNRYQRQ RLYTRIALGK AKRMDVVWGE TAGVDGQLLL LFPILFTLQG FEAYVGFQLL
301: RTVLMGVVAE WQVLVCGILL VVMAIGNFIN TVETLMVKSR FKAKMKRSKS RAEL
101: GRFVRMFLGP VNVRASRKDI QLKVKEEYNS YRDRTALLFL VFPAILLTLR SYVWDGCLPA FPVQLYQAWL LFLYAGLVMR ENILRANGSD IRSWWLYHHY
201: FAMAMSLVSL TWEIKGQPNC VQKQKGVRLF LQWAMMQGVA MLLQNRYQRQ RLYTRIALGK AKRMDVVWGE TAGVDGQLLL LFPILFTLQG FEAYVGFQLL
301: RTVLMGVVAE WQVLVCGILL VVMAIGNFIN TVETLMVKSR FKAKMKRSKS RAEL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.