CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70518	Canola	endoplasmic reticulum, golgi, plasma membrane	82.37	97.2
CDY62149	Canola	extracellular, golgi	55.59	95.35
CDY70882	Canola	mitochondrion	36.27	86.29
CDX85978	Canola	cytosol, peroxisome, plasma membrane	92.88	83.79
CDY44965	Canola	cytosol, peroxisome, plasma membrane	95.25	79.15
AT1G33230.2	Thale cress	plastid	92.2	76.84
CDX94258	Canola	cytosol, peroxisome, plasma membrane	85.42	72.21
CDX93786	Canola	cytosol, peroxisome, plasma membrane	71.19	71.19
KRG93048	Soybean	cytosol, peroxisome, plasma membrane	79.66	66.38
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	79.32	66.1
VIT_02s0025g03210.t01	Wine grape	cytosol, peroxisome, plasma membrane	80.68	65.93
Zm00001d024602_P001	Maize	plasma membrane	73.22	58.7
EES14557	Sorghum	peroxisome	73.9	58.6
Solyc03g096810.2.1	Tomato	nucleus	72.88	57.95
Os08t0152800-00	Rice	peroxisome	70.51	57.78
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	72.54	57.68
HORVU7Hr1G071960.1	Barley	nucleus, peroxisome, plasma membrane	70.85	57.58
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	71.53	57.34
Zm00001d049571_P001	Maize	peroxisome	71.86	56.99
TraesCS7B01G203600.1	Wheat	nucleus, peroxisome, plasma membrane	70.17	56.71
TraesCS7D01G298800.1	Wheat	nucleus, peroxisome, plasma membrane	70.17	56.71
TraesCS7A01G303400.1	Wheat	nucleus, peroxisome, plasma membrane	69.83	56.44
Os02t0106800-01	Rice	plasma membrane	66.78	55.65
EES04336	Sorghum	cytosol	65.76	54.8
TraesCS6D01G028000.1	Wheat	nucleus, peroxisome, plasma membrane	66.78	54.42
TraesCS6A01G024600.1	Wheat	nucleus, peroxisome, plasma membrane	66.44	54.14
HORVU6Hr1G004260.1	Barley	cytosol	66.1	52.85
GSMUA_Achr2P17850_001	Banana	plasma membrane	72.2	51.7
Zm00001d014951_P002	Maize	cytosol	57.63	47.22
GSMUA_AchrUn_...	Banana	cytosol	14.92	40.37
CDY25256	Canola	cytosol, nucleus, plastid	26.78	38.16

Protein Annotations

EnsemblPlants:CDY62148	EnsemblPlantsGene:GSBRNA2T00036002001	GO:A0A078J9H8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMPIT	PANTHER:PTHR21433	PANTHER:PTHR21433:SF0	PFAM:PF07851	ProteinID:CDY62148	ProteinID:CDY62148.1
TMHMM:TMhelix	UniParc:UPI0004EDBEB2	UniProt:A0A078J9H8	MapMan:35.2	:	:

Description

BnaCnng39360DBnaCnng39360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9H8]

Coordinates

chrLK034105:+:13819..17694

Molecular Weight (calculated)

33920.3 Da

IEP (calculated)

10.256

GRAVY (calculated)

0.172

Length

295 amino acids

Sequence
(BLAST)

001: MIHGLKFLFH LSLQLEEDLQ RARCMLADGD TSSFLPSKPQ GRFVRMFLGP VNVRASRKDI QLKVKEEYNS YRDRTALLFL VFPAILLTLR SYVWEGCLPA
101: FPVQLYQAWL LFLYAGLAMR ENILRANGSD IRSWWLYHHY CAMAMALVSL TWEIRGQPNC VQKQKGVRLF LQWAMMQGVA MLLQNRYQRQ RLYTRIALGK
201: AKRMDVVWGE TAGVDGQLLL LCPILFTLQG FEAYVGLQLL RTALTGVVGE WQVLICGILL VVMAIGNFIN TVETLMVKSR FKAKMKRSKS RAELD

Best Arabidopsis Sequence Match ( AT1G33230.1 )
(BLAST)

001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL

Arabidopsis Description

TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.