CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70518	Canola	endoplasmic reticulum, golgi, plasma membrane	76.45	100.0
CDY62149	Canola	extracellular, golgi	48.93	93.02
CDY62148	Canola	plasma membrane	83.79	92.88
CDY70882	Canola	mitochondrion	33.33	87.9
CDY44965	Canola	cytosol, peroxisome, plasma membrane	94.8	87.32
CDX93786	Canola	cytosol, peroxisome, plasma membrane	75.54	83.73
CDX94258	Canola	cytosol, peroxisome, plasma membrane	85.63	80.23
AT1G33230.2	Thale cress	plastid	83.18	76.84
KRG93048	Soybean	cytosol, peroxisome, plasma membrane	75.23	69.49
VIT_02s0025g03210.t01	Wine grape	cytosol, peroxisome, plasma membrane	76.45	69.25
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	74.62	68.93
Solyc03g096810.2.1	Tomato	nucleus	70.03	61.73
EES14557	Sorghum	peroxisome	70.03	61.56
Zm00001d024602_P001	Maize	plasma membrane	69.11	61.41
Os08t0152800-00	Rice	peroxisome	67.58	61.39
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	69.42	61.19
HORVU7Hr1G071960.1	Barley	nucleus, peroxisome, plasma membrane	67.58	60.88
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	67.89	60.33
TraesCS7B01G203600.1	Wheat	nucleus, peroxisome, plasma membrane	66.67	59.73
TraesCS7D01G298800.1	Wheat	nucleus, peroxisome, plasma membrane	66.67	59.73
Zm00001d049571_P001	Maize	peroxisome	67.89	59.68
TraesCS7A01G303400.1	Wheat	nucleus, peroxisome, plasma membrane	66.36	59.45
Os02t0106800-01	Rice	plasma membrane	63.91	59.04
EES04336	Sorghum	cytosol	63.0	58.19
TraesCS6D01G028000.1	Wheat	nucleus, peroxisome, plasma membrane	63.61	57.46
TraesCS6A01G024600.1	Wheat	nucleus, peroxisome, plasma membrane	63.3	57.18
GSMUA_Achr2P17850_001	Banana	plasma membrane	68.81	54.61
HORVU6Hr1G004260.1	Barley	cytosol	59.94	53.12
CDY25256	Canola	cytosol, nucleus, plastid	32.11	50.72
Zm00001d014951_P002	Maize	cytosol	55.35	50.28
GSMUA_AchrUn_...	Banana	cytosol	14.07	42.2

Protein Annotations

EnsemblPlants:CDX85978	EnsemblPlantsGene:GSBRNA2T00143845001	GO:A0A078DF95	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMPIT	PANTHER:PTHR21433	PANTHER:PTHR21433:SF0	PFAM:PF07851	ProteinID:CDX85978	ProteinID:CDX85978.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF282C	MapMan:35.2	:	:

Description

BnaC06g21560D

Coordinates

chrLK031843:+:1302953..1305997

Molecular Weight (calculated)

37405.0 Da

IEP (calculated)

9.744

GRAVY (calculated)

0.023

Length

327 amino acids

Sequence
(BLAST)

001: MSSDTMEVEE EVRRIVEQVK DLHDSATAFV SSSSHEELSL RKRSSALEED LQRARCMLAD GDTSSFLPSK PQGRFVRMFL GPVNVRASRK DIQLKVKEEY
101: NSYRDRTALL FLVFPAILLT LRSYVWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRSWWLYH HYCAMAMALV SLTWEIKGQP NCVQKQKGVR
201: LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPLLFTL QGFEAYVGLQ LLRTALTGVV AEWQVLICGI LLVVMAVGNF
301: INTVETLMVK SRFKAKMKRS KSRAELD

Best Arabidopsis Sequence Match ( AT1G33230.1 )
(BLAST)

001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL

Arabidopsis Description

TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.