Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049571_P001 | Maize | peroxisome | 91.3 | 90.32 |
| EES14557 | Sorghum | peroxisome | 90.76 | 89.78 |
| Os08t0152800-00 | Rice | peroxisome | 82.88 | 84.72 |
| HORVU7Hr1G071960.1 | Barley | nucleus, peroxisome, plasma membrane | 80.71 | 81.82 |
| TraesCS7A01G303400.1 | Wheat | nucleus, peroxisome, plasma membrane | 79.62 | 80.27 |
| TraesCS7D01G298800.1 | Wheat | nucleus, peroxisome, plasma membrane | 79.62 | 80.27 |
| TraesCS7B01G203600.1 | Wheat | nucleus, peroxisome, plasma membrane | 79.35 | 80.0 |
| CDY70518 | Canola | endoplasmic reticulum, golgi, plasma membrane | 52.99 | 78.0 |
| CDY70882 | Canola | mitochondrion | 25.54 | 75.81 |
| CDY62149 | Canola | extracellular, golgi | 35.05 | 75.0 |
| CDY62148 | Canola | plasma membrane | 58.7 | 73.22 |
| Bra036730.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 61.14 | 69.88 |
| CDX85978 | Canola | cytosol, peroxisome, plasma membrane | 61.41 | 69.11 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 66.3 | 66.3 |
| Bra040009.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 62.23 | 65.99 |
| VIT_02s0025g03210.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 64.13 | 65.37 |
| KRG93048 | Soybean | cytosol, peroxisome, plasma membrane | 62.77 | 65.25 |
| CDY44965 | Canola | cytosol, peroxisome, plasma membrane | 62.77 | 65.07 |
| Bra033173.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 61.14 | 65.03 |
| KRH36308 | Soybean | cytosol, peroxisome, plasma membrane | 62.5 | 64.97 |
| CDX94258 | Canola | cytosol, peroxisome, plasma membrane | 60.6 | 63.9 |
| Solyc03g096810.2.1 | Tomato | nucleus | 64.13 | 63.61 |
| AT4G10430.1 | Thale cress | cytosol, peroxisome, plasma membrane | 59.78 | 63.4 |
| PGSC0003DMT400001473 | Potato | cytosol, peroxisome, plasma membrane | 63.86 | 63.34 |
| AT1G33230.2 | Thale cress | plastid | 59.51 | 61.86 |
| CDX93786 | Canola | cytosol, peroxisome, plasma membrane | 49.18 | 61.36 |
| GSMUA_Achr2P17850_001 | Banana | plasma membrane | 67.66 | 60.44 |
| Zm00001d014951_P002 | Maize | cytosol | 56.79 | 58.06 |
| CDY25256 | Canola | cytosol, nucleus, plastid | 21.74 | 38.65 |
Protein Annotations
| EMBL:EU966870 | EnsemblPlants:Zm00001d024602_P001 | EnsemblPlants:Zm00001d024602_T001 | EnsemblPlantsGene:Zm00001d024602 | EntrezGene:100277122 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:TMPIT | ncoils:Coil | PANTHER:PTHR21433 | PANTHER:PTHR21433:SF4 |
| PFAM:PF07851 | ProteinID:AQK41567.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000182E0A8 | UniProt:B6TPF5 |
| MapMan:35.2 | : | : | : | : | : |
Description
TMPIT-like protein
Coordinates
chr10:+:80081092..80085827
Molecular Weight (calculated)
41123.4 Da
IEP (calculated)
9.416
GRAVY (calculated)
0.024
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGGGEEDG AAAAARAAEQ ARELQDAAAA LLTQTRAEEE ALRRRAAALQ GELRRLREAA AAHADSDKVE EDLDRAACLI AEGDVASLLP SKTQGAFLKM
101: FLGPVNLRAT RKEVQLKVKE EYNSYRDRTA LLFLCFPVIL LFLRQWLWNG CFPVLPVQLY QAWLLFLYTS LALRENILRV NGSDIRPWWI LHHYCAMLMS
201: LVSLTWEIKG QPNCARKQRG VELFLCWAIM QGFVMMLQNR YQRQRLYTRI ALGKAKRMDV VWGETAGVEG QLLLLCPLLF LLQGFEGYVG FLLLRTAHTG
301: VVPEWQVVVC GILLIAMAIG NFANTVDTLV TKSRFKAKMK KSKGRRDLDT CPSPTGSSSP IDSATTKA
101: FLGPVNLRAT RKEVQLKVKE EYNSYRDRTA LLFLCFPVIL LFLRQWLWNG CFPVLPVQLY QAWLLFLYTS LALRENILRV NGSDIRPWWI LHHYCAMLMS
201: LVSLTWEIKG QPNCARKQRG VELFLCWAIM QGFVMMLQNR YQRQRLYTRI ALGKAKRMDV VWGETAGVEG QLLLLCPLLF LLQGFEGYVG FLLLRTAHTG
301: VVPEWQVVVC GILLIAMAIG NFANTVDTLV TKSRFKAKMK KSKGRRDLDT CPSPTGSSSP IDSATTKA
001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
Arabidopsis Description
TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.