Factsheet for Bra040009.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 2
peroxisome 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70518	Canola	endoplasmic reticulum, golgi, plasma membrane	72.05	100.0
Bra036730.1-P	Field mustard	cytosol, peroxisome, plasma membrane	88.76	95.65
Bra033173.1-P	Field mustard	cytosol, peroxisome, plasma membrane	85.88	86.13
AT1G33230.2	Thale cress	plastid	78.96	77.4
VIT_02s0025g03210.t01	Wine grape	cytosol, peroxisome, plasma membrane	75.5	72.58
KRG93048	Soybean	cytosol, peroxisome, plasma membrane	73.78	72.32
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	73.2	71.75
Solyc03g096810.2.1	Tomato	nucleus	67.72	63.34
Os08t0152800-00	Rice	peroxisome	65.42	63.06
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	67.15	62.8
Zm00001d024602_P001	Maize	plasma membrane	65.99	62.23
EES14557	Sorghum	peroxisome	66.57	62.1
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	65.42	61.68
Os02t0106800-01	Rice	plasma membrane	62.54	61.3
HORVU7Hr1G071960.1	Barley	nucleus, peroxisome, plasma membrane	63.98	61.16
Zm00001d049571_P001	Maize	peroxisome	64.55	60.22
EES04336	Sorghum	cytosol	61.38	60.17
TraesCS7B01G203600.1	Wheat	nucleus, peroxisome, plasma membrane	63.11	60.0
TraesCS7D01G298800.1	Wheat	nucleus, peroxisome, plasma membrane	63.11	60.0
TraesCS7A01G303400.1	Wheat	nucleus, peroxisome, plasma membrane	62.82	59.73
TraesCS6D01G028000.1	Wheat	nucleus, peroxisome, plasma membrane	62.25	59.67
TraesCS6A01G024600.1	Wheat	nucleus, peroxisome, plasma membrane	61.96	59.39
GSMUA_Achr2P17850_001	Banana	plasma membrane	67.15	56.55
HORVU6Hr1G004260.1	Barley	cytosol	58.79	55.28
Zm00001d014951_P002	Maize	cytosol	54.76	52.78
GSMUA_AchrUn_...	Banana	cytosol	13.26	42.2

Protein Annotations

EnsemblPlants:Bra040009.1	EnsemblPlants:Bra040009.1-P	EnsemblPlantsGene:Bra040009	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMPIT	PANTHER:PTHR21433	PANTHER:PTHR21433:SF0	PFAM:PF07851	SEG:seg	TMHMM:TMhelix
UniParc:UPI000253EB8E	UniProt:M4FFY5	MapMan:35.2	:	:	:

Description

AT1G33230 (E=1e-176) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10430.3); Has 198 Blast hits to 198 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

Coordinates

chrScaffold000185:+:132781..135440

Molecular Weight (calculated)

39701.8 Da

IEP (calculated)

9.824

GRAVY (calculated)

0.006

Length

347 amino acids

Sequence
(BLAST)

001: MEVEEEVRRI VEQVKDLHDS ATSFVASSSH EELSLRKRSS AVEASITRLH STLVSDKHLD PKLFDKLEED LQRARCMLAD GDSSSFLPSK PQGRFVRMFL
101: GPVNVRASRK DIQLKVKEEY NSYRDRTALL FLVFPAILLT LRSYVWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRSWWLYH HYCAMAMALV
201: SLTWEIKGQP NCVQKQKGVR LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPLLFTL QGFEAYVGLQ LLRTALTGVV
301: AEWQVLICGI LLVVMAVGNF INTVETLMVK SRFKAKMKRS KSRAELD

Best Arabidopsis Sequence Match ( AT1G33230.1 )
(BLAST)

001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL

Arabidopsis Description

TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.