Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04336 | Sorghum | cytosol | 84.17 | 85.59 |
| Os02t0106800-01 | Rice | plasma membrane | 75.56 | 76.84 |
| TraesCS6D01G028000.1 | Wheat | nucleus, peroxisome, plasma membrane | 75.83 | 75.41 |
| TraesCS6A01G024600.1 | Wheat | nucleus, peroxisome, plasma membrane | 75.56 | 75.14 |
| HORVU6Hr1G004260.1 | Barley | cytosol | 68.06 | 66.4 |
| CDY70518 | Canola | endoplasmic reticulum, golgi, plasma membrane | 42.22 | 60.8 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 60.56 | 59.24 |
| CDX93786 | Canola | cytosol, peroxisome, plasma membrane | 47.22 | 57.63 |
| CDY62148 | Canola | plasma membrane | 47.22 | 57.63 |
| Zm00001d024602_P001 | Maize | plasma membrane | 58.06 | 56.79 |
| Zm00001d049571_P001 | Maize | peroxisome | 57.78 | 55.91 |
| Bra036730.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 50.0 | 55.9 |
| CDX85978 | Canola | cytosol, peroxisome, plasma membrane | 50.28 | 55.35 |
| CDY62149 | Canola | extracellular, golgi | 26.39 | 55.23 |
| Bra040009.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 52.78 | 54.76 |
| Bra033173.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 52.5 | 54.62 |
| VIT_02s0025g03210.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 54.72 | 54.57 |
| Solyc03g096810.2.1 | Tomato | nucleus | 56.11 | 54.45 |
| KRG93048 | Soybean | cytosol, peroxisome, plasma membrane | 53.33 | 54.24 |
| KRH36308 | Soybean | cytosol, peroxisome, plasma membrane | 53.33 | 54.24 |
| PGSC0003DMT400001473 | Potato | cytosol, peroxisome, plasma membrane | 55.83 | 54.18 |
| CDX94258 | Canola | cytosol, peroxisome, plasma membrane | 52.22 | 53.87 |
| GSMUA_Achr2P17850_001 | Banana | plasma membrane | 61.39 | 53.64 |
| CDY44965 | Canola | cytosol, peroxisome, plasma membrane | 52.5 | 53.24 |
| AT4G10430.1 | Thale cress | cytosol, peroxisome, plasma membrane | 50.28 | 52.16 |
| CDY70882 | Canola | mitochondrion | 17.78 | 51.61 |
| AT1G33230.2 | Thale cress | plastid | 48.61 | 49.44 |
| CDY25256 | Canola | cytosol, nucleus, plastid | 20.83 | 36.23 |
Protein Annotations
| EnsemblPlants:Zm00001d014951_P002 | EnsemblPlants:Zm00001d014951_T002 | EnsemblPlantsGene:Zm00001d014951 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMPIT | ncoils:Coil | PANTHER:PTHR21433 | PANTHER:PTHR21433:SF4 | PFAM:PF07851 | ProteinID:AQK67701.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI00084493FE | UniProt:A0A1D6GY38 | MapMan:35.2 | : |
Description
TMPIT-like protein
Coordinates
chr5:+:69611597..69615673
Molecular Weight (calculated)
40530.3 Da
IEP (calculated)
9.017
GRAVY (calculated)
-0.023
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGDGDARGL EAAAATAAEA ARELREAAAA LVATRAAEED ALRRRAVALE ADVRRLQASL HALDPSTLDK VEEELERARV AITDSDVASF LPSKRNGKFL
101: KTFLGPVNVR VARKEDKLKI KDEYNNYRDR TAYKFLLFPS ILLLLRWWIW DGCLPALAVQ IYQAWLLYLY TSFALRENVL IANGSDIRPW WIYHHYLAML
201: MALISLTWEI KGQPDCSSKQ RGVQLFLRWA IMQGIAMHLQ NRYQRQRLRT RIALGKVNLT SLPINKAKRM DVVAGETAGV EGQLLLLYPV LFILQGFEAY
301: VGVLLLQTAL HGLASEWQAR MIQQLSLLTV ECLSLRDLAG GYGSRQLCPH YGDTGTETEV
101: KTFLGPVNVR VARKEDKLKI KDEYNNYRDR TAYKFLLFPS ILLLLRWWIW DGCLPALAVQ IYQAWLLYLY TSFALRENVL IANGSDIRPW WIYHHYLAML
201: MALISLTWEI KGQPDCSSKQ RGVQLFLRWA IMQGIAMHLQ NRYQRQRLRT RIALGKVNLT SLPINKAKRM DVVAGETAGV EGQLLLLYPV LFILQGFEAY
301: VGVLLLQTAL HGLASEWQAR MIQQLSLLTV ECLSLRDLAG GYGSRQLCPH YGDTGTETEV
001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
Arabidopsis Description
TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.