CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	endoplasmic reticulum, golgi, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62149	Canola	extracellular, golgi	64.0	93.02
CDY70882	Canola	mitochondrion	43.6	87.9
CDY62148	Canola	plasma membrane	97.2	82.37
CDX85978	Canola	cytosol, peroxisome, plasma membrane	100.0	76.45
Bra040009.1-P	Field mustard	cytosol, peroxisome, plasma membrane	100.0	72.05
CDY44965	Canola	cytosol, peroxisome, plasma membrane	97.2	68.45
AT1G33230.2	Thale cress	plastid	94.4	66.67
CDX94258	Canola	cytosol, peroxisome, plasma membrane	90.0	64.47
CDX93786	Canola	cytosol, peroxisome, plasma membrane	73.6	62.37
KRG93048	Soybean	cytosol, peroxisome, plasma membrane	84.8	59.89
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	84.4	59.6
VIT_02s0025g03210.t01	Wine grape	cytosol, peroxisome, plasma membrane	84.8	58.73
Zm00001d024602_P001	Maize	plasma membrane	78.0	52.99
EES14557	Sorghum	peroxisome	78.4	52.69
HORVU7Hr1G071960.1	Barley	nucleus, peroxisome, plasma membrane	76.4	52.62
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	78.0	52.56
Solyc03g096810.2.1	Tomato	nucleus	78.0	52.56
Os08t0152800-00	Rice	peroxisome	75.6	52.5
TraesCS7D01G298800.1	Wheat	nucleus, peroxisome, plasma membrane	75.2	51.51
TraesCS7A01G303400.1	Wheat	nucleus, peroxisome, plasma membrane	75.2	51.51
TraesCS7B01G203600.1	Wheat	nucleus, peroxisome, plasma membrane	75.2	51.51
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	75.6	51.36
Zm00001d049571_P001	Maize	peroxisome	76.4	51.34
Os02t0106800-01	Rice	plasma membrane	72.4	51.13
EES04336	Sorghum	cytosol	70.8	50.0
TraesCS6D01G028000.1	Wheat	nucleus, peroxisome, plasma membrane	72.0	49.72
TraesCS6A01G024600.1	Wheat	nucleus, peroxisome, plasma membrane	71.6	49.45
HORVU6Hr1G004260.1	Barley	cytosol	71.6	48.51
GSMUA_Achr2P17850_001	Banana	plasma membrane	78.0	47.33
Zm00001d014951_P002	Maize	cytosol	60.8	42.22
GSMUA_AchrUn_...	Banana	cytosol	10.4	23.85
CDY25256	Canola	cytosol, nucleus, plastid	19.2	23.19

Protein Annotations

EnsemblPlants:CDY70518	EnsemblPlantsGene:GSBRNA2T00003946001	GO:A0A078JSC9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMPIT	PANTHER:PTHR21433	PANTHER:PTHR21433:SF0	PFAM:PF07851	ProteinID:CDY70518	ProteinID:CDY70518.1
TMHMM:TMhelix	UniParc:UPI0004EF292C	UniProt:A0A078JSC9	MapMan:35.2	:	:

Description

BnaAnng33980DBnaAnng33980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSC9]

Coordinates

chrLK042362:+:116..2514

Molecular Weight (calculated)

28721.9 Da

IEP (calculated)

10.276

GRAVY (calculated)

0.237

Length

250 amino acids

Sequence
(BLAST)

001: MFLGPVNVRA SRKDIQLKVK EEYNSYRDRT ALLFLVFPAI LLTLRSYVWG GCLPAFPVQL YEAWLLFLYA GLAMRENILR ANGSDIRSWW LYHHYCAMAM
101: ALVSLTWEIK GQPNCVQKQK GVRLFLQWAM MQGVAMLLQN RYQRQRLYTR IALGKAKRMD VVWGETAGVD GQLWLLCPLL FTLQGFEAYV GLQLLRTALT
201: GVVAEWQVLI CGILLVVMAV GNFINTVETL MVKSRFKAKM KRSKSRAELD

Best Arabidopsis Sequence Match ( AT1G33230.2 )
(BLAST)

001: MTLPHPSSLL LLKKSFLSVT EPPSLTHQSA VFILLLPLTN ISIPSFSKRL IFYNLSLCLC FSISPILNFV LLLQLEEDLQ RARCMLADGD TSSFLPSKPQ
101: GRFVRMFLGP VNVRASRKDI QLKVKEEYNS YRDRTALLFL VFPAILLTLR SYVWDGCLPA FPVQLYQAWL LFLYAGLVMR ENILRANGSD IRSWWLYHHY
201: FAMAMSLVSL TWEIKGQPNC VQKQKGVRLF LQWAMMQGVA MLLQNRYQRQ RLYTRIALGK AKRMDVVWGE TAGVDGQLLL LFPILFTLQG FEAYVGFQLL
301: RTVLMGVVAE WQVLVCGILL VVMAIGNFIN TVETLMVKSR FKAKMKRSKS RAEL

Arabidopsis Description

TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.