CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10430.1	KRH11076	AT4G19030.1	21798944
AT4G10430.1	KRH21197	AT4G19030.1	21798944
AT4G10430.1	KRH42923	AT4G19030.1	21798944
AT4G10430.1	KRH42926	AT4G19030.1	21798944
AT4G10430.1	KRH45251	AT4G19030.1	21798944
AT4G10430.1	KRH59035	AT4G19030.1	21798944
AT4G10430.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	98.02	98.02
CDY70518	Canola	endoplasmic reticulum, golgi, plasma membrane	59.89	84.8
CDY70882	Canola	mitochondrion	28.81	82.26
VIT_02s0025g03210.t01	Wine grape	cytosol, peroxisome, plasma membrane	83.62	81.99
CDY62149	Canola	extracellular, golgi	39.27	80.81
CDY62148	Canola	plasma membrane	66.38	79.66
Bra036730.1-P	Field mustard	cytosol, peroxisome, plasma membrane	68.93	75.78
CDX85978	Canola	cytosol, peroxisome, plasma membrane	69.49	75.23
AT4G10430.1	Thale cress	cytosol, peroxisome, plasma membrane	72.32	73.78
Bra040009.1-P	Field mustard	cytosol, peroxisome, plasma membrane	72.32	73.78
Bra033173.1-P	Field mustard	cytosol, peroxisome, plasma membrane	71.47	73.12
CDY44965	Canola	cytosol, peroxisome, plasma membrane	72.6	72.39
CDX94258	Canola	cytosol, peroxisome, plasma membrane	70.62	71.63
CDX93786	Canola	cytosol, peroxisome, plasma membrane	57.34	68.81
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	70.62	67.93
AT1G33230.2	Thale cress	plastid	66.67	66.67
Os08t0152800-00	Rice	peroxisome	65.54	64.44
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	67.51	64.42
Solyc03g096810.2.1	Tomato	nucleus	67.51	64.42
HORVU7Hr1G071960.1	Barley	nucleus, peroxisome, plasma membrane	64.69	63.09
EES14557	Sorghum	peroxisome	66.1	62.9
Zm00001d024602_P001	Maize	plasma membrane	65.25	62.77
TraesCS7D01G298800.1	Wheat	nucleus, peroxisome, plasma membrane	64.69	62.74
TraesCS7B01G203600.1	Wheat	nucleus, peroxisome, plasma membrane	64.69	62.74
TraesCS7A01G303400.1	Wheat	nucleus, peroxisome, plasma membrane	64.69	62.74
GSMUA_Achr2P17850_001	Banana	plasma membrane	72.03	61.89
Os02t0106800-01	Rice	plasma membrane	61.86	61.86
TraesCS6A01G024600.1	Wheat	nucleus, peroxisome, plasma membrane	62.99	61.6
TraesCS6D01G028000.1	Wheat	nucleus, peroxisome, plasma membrane	62.99	61.6
Zm00001d049571_P001	Maize	peroxisome	64.69	61.56
EES04336	Sorghum	cytosol	59.6	59.6
HORVU6Hr1G004260.1	Barley	cytosol	58.76	56.37
Zm00001d014951_P002	Maize	cytosol	54.24	53.33
CDY25256	Canola	cytosol, nucleus, plastid	25.42	43.48
GSMUA_AchrUn_...	Banana	cytosol	12.15	39.45

Protein Annotations

EMBL:ACUP02012778	EnsemblPlants:KRG93048	EnsemblPlantsGene:GLYMA_20G245400	EntrezGene:100813451	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMPIT	PANTHER:PTHR21433	PANTHER:PTHR21433:SF0	PFAM:PF07851	ProteinID:KRG93048
ProteinID:KRG93048.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233DE84	UniProt:I1NJA6	MapMan:35.2

Description

hypothetical protein

Coordinates

chr20:+:47582518..47587539

Molecular Weight (calculated)

40271.4 Da

IEP (calculated)

9.983

GRAVY (calculated)

0.012

Length

354 amino acids

Sequence
(BLAST)

001: MEESSSIEES VASVVEEAKE VQDAVSAHIS KASSDEEPLR QRVRRVDSRI HSLRSSLDSL VSTKQIPPSL ADKLDEDLQR ARCIIVDGDS SSLLPGHAQG
101: SFLRMFLGPI NVRASRKDVQ LKVKEEYNSY RDRTALLFLL FPATLLILRS WVWSGCLPTF PVQMYQAWLL FLYTGLALRE NILRVNGSDI RPWWIYHHYC
201: AMVMALVSLT WEIKGQPDCA KKQRGVQLFL QWAMMQGVAM LLQNRYQRQR LYTRIALGKA KRMDVVWGET AGVDGQLWLL CPILFTLQGF EAYVGLLLLR
301: TAVVGVVSEW QVIFCGVLLV LMAVGNFANT VQTLMAKSRF KAKMRRSKSK QRLN

Best Arabidopsis Sequence Match ( AT4G10430.1 )
(BLAST)

001: MEVEEEVKQI IDEVKELHDS AASFISSSSQ QELSLRQKAS AVDSSIRRLH STIVSNKNLD PKLVEKLEED LHRARCMLVD GETSSFLPSK PQGRFVRMFC
101: GPVNVRALRK DVQLKVKEEY NRYRDKTALL FLFFPATLLI LRSYYWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRPWWLYH HYCAMAMALV
201: SLTWEIKGQP NCVQKQRGVH LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPILFIL QVFEAYVGLL LLRKTVTGVV
301: NEWQVMVCGI LLVVMAVGNF INTVETLMAK SRVKAKMKRS KSRAELN

Arabidopsis Description

TMPIT-like protein [Source:UniProtKB/TrEMBL;Acc:Q93XX0]
SUBAcon: [cytosol,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.