Factsheet for HORVU7Hr1G071960.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

plastid 1
nucleus 1
peroxisome 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10430.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G303400.1	Wheat	nucleus, peroxisome, plasma membrane	95.32	94.79
TraesCS7D01G298800.1	Wheat	nucleus, peroxisome, plasma membrane	95.04	94.52
TraesCS7B01G203600.1	Wheat	nucleus, peroxisome, plasma membrane	94.49	93.97
Os08t0152800-00	Rice	peroxisome	85.4	86.11
EES14557	Sorghum	peroxisome	83.47	81.45
Zm00001d024602_P001	Maize	plasma membrane	81.82	80.71
Zm00001d049571_P001	Maize	peroxisome	82.64	80.65
CDY70518	Canola	endoplasmic reticulum, golgi, plasma membrane	52.62	76.4
CDY70882	Canola	mitochondrion	25.62	75.0
CDY62149	Canola	extracellular, golgi	35.26	74.42
CDY62148	Canola	plasma membrane	57.58	70.85
Bra036730.1-P	Field mustard	cytosol, peroxisome, plasma membrane	60.88	68.63
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	68.59	67.66
CDX85978	Canola	cytosol, peroxisome, plasma membrane	60.88	67.58
VIT_02s0025g03210.t01	Wine grape	cytosol, peroxisome, plasma membrane	64.74	65.1
KRG93048	Soybean	cytosol, peroxisome, plasma membrane	63.09	64.69
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	63.09	64.69
Bra040009.1-P	Field mustard	cytosol, peroxisome, plasma membrane	61.16	63.98
Bra033173.1-P	Field mustard	cytosol, peroxisome, plasma membrane	60.61	63.58
CDY44965	Canola	cytosol, peroxisome, plasma membrane	61.98	63.38
AT4G10430.1	Thale cress	cytosol, peroxisome, plasma membrane	60.33	63.11
Solyc03g096810.2.1	Tomato	nucleus	64.46	63.07
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	64.19	62.8
CDX94258	Canola	cytosol, peroxisome, plasma membrane	60.06	62.46
GSMUA_Achr2P17850_001	Banana	plasma membrane	68.59	60.44
CDX93786	Canola	cytosol, peroxisome, plasma membrane	49.04	60.34
AT1G33230.2	Thale cress	plastid	58.68	60.17
HORVU6Hr1G004260.1	Barley	cytosol	57.3	56.37
CDY25256	Canola	cytosol, nucleus, plastid	20.66	36.23

Protein Annotations

EMBL:AK368330	EnsemblPlants:HORVU7Hr1G071960.1	EnsemblPlantsGene:HORVU7Hr1G071960	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMPIT	ncoils:Coil	PANTHER:PTHR21433	PANTHER:PTHR21433:SF4	PFAM:PF07851	SEG:seg
TMHMM:TMhelix	UniParc:UPI00020079AB	UniProt:F2DWR2	MapMan:35.2	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DWR2]

Coordinates

chrchr7H:-:400518832..400523187

Molecular Weight (calculated)

40737.2 Da

IEP (calculated)

9.703

GRAVY (calculated)

0.103

Length

363 amino acids

Sequence
(BLAST)

001: MGEAGEQTAE AAALRAAEQA RELQDAAAAL LSRTWAEEEA LRRRAAALRE DLARLRKAAA CAQTEKVHED LDRASCLISD GDIATILPSK AHGTFLKLLL
101: GPVNLRARKE VQLKVKEEYN SYRDRTAIVF LGFPMILLFL RSWLWNGCFP ALPVQLYQAW LLFLYTTLAL RENILRVNGS DIRPWWVCHH YCAMLMALVS
201: LTWEIKGQPD CARKQRGVEL FLCWAVMQGF AMMLQNRYQR QRLYTRIALG KAKRMDVVWG ETAGVEGQLL LLCPVLFLLQ VFEGYVGFLL LRTAHTGIIP
301: EWQVVVCGIL LIAMAIGNFA NTVDTLMVKS RFKAKMKKSK SKRDLAACTS PTRSSLTNSA AGA

Best Arabidopsis Sequence Match ( AT1G33230.1 )
(BLAST)

001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL

Arabidopsis Description

TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.