Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G298800.1 | Wheat | nucleus, peroxisome, plasma membrane | 98.9 | 98.9 |
| TraesCS7B01G203600.1 | Wheat | nucleus, peroxisome, plasma membrane | 98.08 | 98.08 |
| HORVU7Hr1G071960.1 | Barley | nucleus, peroxisome, plasma membrane | 94.79 | 95.32 |
| Os08t0152800-00 | Rice | peroxisome | 83.56 | 84.72 |
| EES14557 | Sorghum | peroxisome | 81.64 | 80.11 |
| Zm00001d024602_P001 | Maize | plasma membrane | 80.27 | 79.62 |
| Zm00001d049571_P001 | Maize | peroxisome | 81.1 | 79.57 |
| CDY70518 | Canola | endoplasmic reticulum, golgi, plasma membrane | 51.51 | 75.2 |
| CDY70882 | Canola | mitochondrion | 25.48 | 75.0 |
| CDY62149 | Canola | extracellular, golgi | 34.52 | 73.26 |
| CDY62148 | Canola | plasma membrane | 56.44 | 69.83 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 68.49 | 67.93 |
| Bra036730.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.73 | 67.7 |
| CDX85978 | Canola | cytosol, peroxisome, plasma membrane | 59.45 | 66.36 |
| VIT_02s0025g03210.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 64.11 | 64.82 |
| KRG93048 | Soybean | cytosol, peroxisome, plasma membrane | 62.74 | 64.69 |
| KRH36308 | Soybean | cytosol, peroxisome, plasma membrane | 62.74 | 64.69 |
| TraesCS6A01G024600.1 | Wheat | nucleus, peroxisome, plasma membrane | 62.47 | 62.98 |
| Bra040009.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.73 | 62.82 |
| Bra033173.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.45 | 62.72 |
| AT4G10430.1 | Thale cress | cytosol, peroxisome, plasma membrane | 59.45 | 62.54 |
| CDY44965 | Canola | cytosol, peroxisome, plasma membrane | 60.82 | 62.54 |
| PGSC0003DMT400001473 | Potato | cytosol, peroxisome, plasma membrane | 63.56 | 62.53 |
| Solyc03g096810.2.1 | Tomato | nucleus | 63.56 | 62.53 |
| CDX94258 | Canola | cytosol, peroxisome, plasma membrane | 58.9 | 61.6 |
| GSMUA_Achr2P17850_001 | Banana | plasma membrane | 68.49 | 60.68 |
| CDX93786 | Canola | cytosol, peroxisome, plasma membrane | 48.22 | 59.66 |
| AT1G33230.2 | Thale cress | plastid | 57.53 | 59.32 |
| CDY25256 | Canola | cytosol, nucleus, plastid | 20.55 | 36.23 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G303400.1 | EnsemblPlantsGene:TraesCS7A01G303400 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TMPIT |
| ncoils:Coil | PANTHER:PTHR21433 | PANTHER:PTHR21433:SF4 | PFAM:PF07851 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:426796530..426800243
Molecular Weight (calculated)
40980.5 Da
IEP (calculated)
10.084
GRAVY (calculated)
0.046
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEERKAGEQ AAEAAARAAE QARELQDAAA ALLSRTWAEE EALRRRAAAL REDLARLRKA AANAQTEKVH EDLDRASCLI SDGDIATILP NKAHGTFLKL
101: LLGPVNLRAR KEVQLKVKEE YNSYRDRTAI VFLGFPMILL FLRSWLWNGC FPALPVQLYQ AWLLLLYTTL ALRENILRVN GSDIRPWWVC HHYCAMLMAL
201: VSLTWGIKGQ PDCARKQRGV ELFLCWAVMQ GFAMMLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVEGQ LLLLCPILFL LQVFEGYVGF LLLRTAHKGI
301: IPEWQVVVCG ILLIAMAIGN FANTVDTLMV KSRFKAKMKK SKSKRDLAAC TSPTRSSLTN SAAGA
101: LLGPVNLRAR KEVQLKVKEE YNSYRDRTAI VFLGFPMILL FLRSWLWNGC FPALPVQLYQ AWLLLLYTTL ALRENILRVN GSDIRPWWVC HHYCAMLMAL
201: VSLTWGIKGQ PDCARKQRGV ELFLCWAVMQ GFAMMLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVEGQ LLLLCPILFL LQVFEGYVGF LLLRTAHKGI
301: IPEWQVVVCG ILLIAMAIGN FANTVDTLMV KSRFKAKMKK SKSKRDLAAC TSPTRSSLTN SAAGA
001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
Arabidopsis Description
TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.