Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85978 | Canola | cytosol, peroxisome, plasma membrane | 83.73 | 75.54 |
| CDY44965 | Canola | cytosol, peroxisome, plasma membrane | 90.17 | 74.93 |
| CDY70518 | Canola | endoplasmic reticulum, golgi, plasma membrane | 62.37 | 73.6 |
| CDY62148 | Canola | plasma membrane | 71.19 | 71.19 |
| CDX94258 | Canola | cytosol, peroxisome, plasma membrane | 81.02 | 68.48 |
| AT1G33230.2 | Thale cress | plastid | 71.86 | 59.89 |
| CDY62149 | Canola | extracellular, golgi | 33.9 | 58.14 |
| KRG93048 | Soybean | cytosol, peroxisome, plasma membrane | 68.81 | 57.34 |
| VIT_02s0025g03210.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 70.17 | 57.34 |
| KRH36308 | Soybean | cytosol, peroxisome, plasma membrane | 68.14 | 56.78 |
| CDY25256 | Canola | cytosol, nucleus, plastid | 36.95 | 52.66 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 64.75 | 51.9 |
| Solyc03g096810.2.1 | Tomato | nucleus | 64.41 | 51.21 |
| Os08t0152800-00 | Rice | peroxisome | 62.03 | 50.83 |
| PGSC0003DMT400001473 | Potato | cytosol, peroxisome, plasma membrane | 63.73 | 50.67 |
| Zm00001d024602_P001 | Maize | plasma membrane | 61.36 | 49.18 |
| HORVU7Hr1G071960.1 | Barley | nucleus, peroxisome, plasma membrane | 60.34 | 49.04 |
| EES14557 | Sorghum | peroxisome | 61.36 | 48.66 |
| TraesCS7B01G203600.1 | Wheat | nucleus, peroxisome, plasma membrane | 60.0 | 48.49 |
| TraesCS7D01G298800.1 | Wheat | nucleus, peroxisome, plasma membrane | 60.0 | 48.49 |
| TraesCS7A01G303400.1 | Wheat | nucleus, peroxisome, plasma membrane | 59.66 | 48.22 |
| Os02t0106800-01 | Rice | plasma membrane | 57.29 | 47.74 |
| Zm00001d049571_P001 | Maize | peroxisome | 60.0 | 47.58 |
| EES04336 | Sorghum | cytosol | 56.95 | 47.46 |
| Zm00001d014951_P002 | Maize | cytosol | 57.63 | 47.22 |
| TraesCS6A01G024600.1 | Wheat | nucleus, peroxisome, plasma membrane | 57.29 | 46.69 |
| TraesCS6D01G028000.1 | Wheat | nucleus, peroxisome, plasma membrane | 57.29 | 46.69 |
| GSMUA_Achr2P17850_001 | Banana | plasma membrane | 63.39 | 45.39 |
| CDY70882 | Canola | mitochondrion | 18.64 | 44.35 |
| HORVU6Hr1G004260.1 | Barley | cytosol | 53.56 | 42.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 13.22 | 35.78 |
Protein Annotations
| EnsemblPlants:CDX93786 | EnsemblPlantsGene:GSBRNA2T00156535001 | GO:A0A078DWW7 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMPIT | PANTHER:PTHR21433 | PANTHER:PTHR21433:SF0 | PFAM:PF07851 | ProteinID:CDX93786 | ProteinID:CDX93786.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF09AE | MapMan:35.2 | : | : |
Description
BnaA09g23860D
Coordinates
chrLK031877:-:798833..800373
Molecular Weight (calculated)
33896.7 Da
IEP (calculated)
9.628
GRAVY (calculated)
0.065
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVEEEVRRI VEQVKDLHDS ATSFVASSSH EELSLRKRSS AVEASITRLH STLVSDKHLD PKLFDKALFF TSPFDLYRIL CMLADGDSSS FLPSKPQGRF
101: VRMFLGPVNV RASRKDIQLK VKEEYNSYRD RTALLFLVFP AILLTLRSYV WGGCLPAFPV QLYEAWLLFL YAGLAMRENI LRANGSDIRS WWLYHHYCAM
201: AMALVSLTWE IKGQPNCVQK QKGVRLFLQW AMMQGVAMLL QNRYQRQRLY TRIALGKAKR MDVVWGETAG VDGQLLLLCP ILFTLQVTIL LILPQ
101: VRMFLGPVNV RASRKDIQLK VKEEYNSYRD RTALLFLVFP AILLTLRSYV WGGCLPAFPV QLYEAWLLFL YAGLAMRENI LRANGSDIRS WWLYHHYCAM
201: AMALVSLTWE IKGQPNCVQK QKGVRLFLQW AMMQGVAMLL QNRYQRQRLY TRIALGKAKR MDVVWGETAG VDGQLLLLCP ILFTLQVTIL LILPQ
001: MEVEEEVKQI IDEVKELHDS AASFISSSSQ QELSLRQKAS AVDSSIRRLH STIVSNKNLD PKLVEKLEED LHRARCMLVD GETSSFLPSK PQGRFVRMFC
101: GPVNVRALRK DVQLKVKEEY NRYRDKTALL FLFFPATLLI LRSYYWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRPWWLYH HYCAMAMALV
201: SLTWEIKGQP NCVQKQRGVH LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPILFIL QVFEAYVGLL LLRKTVTGVV
301: NEWQVMVCGI LLVVMAVGNF INTVETLMAK SRVKAKMKRS KSRAELN
101: GPVNVRALRK DVQLKVKEEY NRYRDKTALL FLFFPATLLI LRSYYWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRPWWLYH HYCAMAMALV
201: SLTWEIKGQP NCVQKQRGVH LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPILFIL QVFEAYVGLL LLRKTVTGVV
301: NEWQVMVCGI LLVVMAVGNF INTVETLMAK SRVKAKMKRS KSRAELN
Arabidopsis Description
TMPIT-like protein [Source:UniProtKB/TrEMBL;Acc:Q93XX0]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.