Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G028000.1 | Wheat | nucleus, peroxisome, plasma membrane | 98.89 | 98.89 |
| Os02t0106800-01 | Rice | plasma membrane | 83.98 | 85.88 |
| EES04336 | Sorghum | cytosol | 82.87 | 84.75 |
| HORVU6Hr1G004260.1 | Barley | cytosol | 85.36 | 83.74 |
| Zm00001d014951_P002 | Maize | cytosol | 75.14 | 75.56 |
| CDY62149 | Canola | extracellular, golgi | 34.25 | 72.09 |
| CDY70882 | Canola | mitochondrion | 24.59 | 71.77 |
| CDY70518 | Canola | endoplasmic reticulum, golgi, plasma membrane | 49.45 | 71.6 |
| CDY62148 | Canola | plasma membrane | 54.14 | 66.44 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 66.57 | 65.49 |
| Bra036730.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 56.63 | 63.66 |
| CDX85978 | Canola | cytosol, peroxisome, plasma membrane | 57.18 | 63.3 |
| KRG93048 | Soybean | cytosol, peroxisome, plasma membrane | 61.6 | 62.99 |
| Bra033173.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.94 | 62.72 |
| VIT_02s0025g03210.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 62.43 | 62.6 |
| TraesCS7A01G303400.1 | Wheat | nucleus, peroxisome, plasma membrane | 62.98 | 62.47 |
| KRH36308 | Soybean | cytosol, peroxisome, plasma membrane | 61.05 | 62.43 |
| Bra040009.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.39 | 61.96 |
| AT4G10430.1 | Thale cress | cytosol, peroxisome, plasma membrane | 58.84 | 61.38 |
| CDX94258 | Canola | cytosol, peroxisome, plasma membrane | 59.12 | 61.32 |
| Solyc03g096810.2.1 | Tomato | nucleus | 62.71 | 61.19 |
| PGSC0003DMT400001473 | Potato | cytosol, peroxisome, plasma membrane | 62.43 | 60.92 |
| CDY44965 | Canola | cytosol, peroxisome, plasma membrane | 59.67 | 60.85 |
| GSMUA_Achr2P17850_001 | Banana | plasma membrane | 67.13 | 58.98 |
| CDX93786 | Canola | cytosol, peroxisome, plasma membrane | 46.69 | 57.29 |
| AT1G33230.2 | Thale cress | plastid | 55.8 | 57.06 |
| CDY25256 | Canola | cytosol, nucleus, plastid | 21.55 | 37.68 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G024600.1 | EnsemblPlantsGene:TraesCS6A01G024600 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TMPIT |
| ncoils:Coil | PANTHER:PTHR21433 | PANTHER:PTHR21433:SF4 | PFAM:PF07851 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:12283648..12287475
Molecular Weight (calculated)
40625.7 Da
IEP (calculated)
10.026
GRAVY (calculated)
-0.019
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGDGAQG LEEQAAAAAE AARELRDAAA ALAVRRAADE DALRRRAVAL DADVRRLQGS LAPLDPATLD KVEEELERAR AAILDGDVAA FLPSKGNGKF
101: LKKFVGPVNV RVARKEEKLK VKDEYNNYRD RAAYMFLLFP STLLLLRWWV WDGCLPALAV QVYQAWLLFL YTSFALRENV LLVNGSDIRP WWIYHHYLAM
201: LMALVSLTWE IKGQPDCSSK QRGVQLFLRW AIMQGIAMHL QNRYQRQRLR TRIALGKAKR MDVVAGETAG VEGQLLLLYP VLFVLQGFEA YVGVLLLQTA
301: WHGLTSEWQV IVCGILLVVM AVGNFVNTVE TLALKLRFKA KMKRTRPRQD PGQGGANRLH QN
101: LKKFVGPVNV RVARKEEKLK VKDEYNNYRD RAAYMFLLFP STLLLLRWWV WDGCLPALAV QVYQAWLLFL YTSFALRENV LLVNGSDIRP WWIYHHYLAM
201: LMALVSLTWE IKGQPDCSSK QRGVQLFLRW AIMQGIAMHL QNRYQRQRLR TRIALGKAKR MDVVAGETAG VEGQLLLLYP VLFVLQGFEA YVGVLLLQTA
301: WHGLTSEWQV IVCGILLVVM AVGNFVNTVE TLALKLRFKA KMKRTRPRQD PGQGGANRLH QN
001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
Arabidopsis Description
TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.