Factsheet for GSMUA_Achr2P17850_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
peroxisome 1
mitochondrion 1
plastid 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10430.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	76.94	86.14
CDY70518	Canola	endoplasmic reticulum, golgi, plasma membrane	47.33	78.0
CDY70882	Canola	mitochondrion	23.06	76.61
CDY62149	Canola	extracellular, golgi	31.31	75.0
CDY62148	Canola	plasma membrane	51.7	72.2
KRG93048	Soybean	cytosol, peroxisome, plasma membrane	61.89	72.03
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	61.65	71.75
VIT_02s0025g03210.t01	Wine grape	cytosol, peroxisome, plasma membrane	62.62	71.47
Bra036730.1-P	Field mustard	cytosol, peroxisome, plasma membrane	54.61	69.88
Os08t0152800-00	Rice	peroxisome	60.19	68.89
CDX85978	Canola	cytosol, peroxisome, plasma membrane	54.61	68.81
TraesCS7D01G298800.1	Wheat	nucleus, peroxisome, plasma membrane	60.92	68.77
HORVU7Hr1G071960.1	Barley	nucleus, peroxisome, plasma membrane	60.44	68.59
EES14557	Sorghum	peroxisome	61.89	68.55
TraesCS7A01G303400.1	Wheat	nucleus, peroxisome, plasma membrane	60.68	68.49
TraesCS7B01G203600.1	Wheat	nucleus, peroxisome, plasma membrane	60.68	68.49
Zm00001d024602_P001	Maize	plasma membrane	60.44	67.66
Solyc03g096810.2.1	Tomato	nucleus	60.92	67.66
AT4G10430.1	Thale cress	cytosol, peroxisome, plasma membrane	56.8	67.44
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	60.68	67.39
EES04336	Sorghum	cytosol	57.77	67.23
Os02t0106800-01	Rice	plasma membrane	57.77	67.23
Zm00001d049571_P001	Maize	peroxisome	60.68	67.2
Bra040009.1-P	Field mustard	cytosol, peroxisome, plasma membrane	56.55	67.15
TraesCS6A01G024600.1	Wheat	nucleus, peroxisome, plasma membrane	58.98	67.13
Bra033173.1-P	Field mustard	cytosol, peroxisome, plasma membrane	56.31	67.05
TraesCS6D01G028000.1	Wheat	nucleus, peroxisome, plasma membrane	58.74	66.85
CDX94258	Canola	cytosol, peroxisome, plasma membrane	56.31	66.48
CDY44965	Canola	cytosol, peroxisome, plasma membrane	56.8	65.92
CDX93786	Canola	cytosol, peroxisome, plasma membrane	45.39	63.39
Zm00001d014951_P002	Maize	cytosol	53.64	61.39
AT1G33230.2	Thale cress	plastid	52.67	61.3
HORVU6Hr1G004260.1	Barley	cytosol	53.4	59.62
GSMUA_AchrUn_...	Banana	cytosol	12.38	46.79
CDY25256	Canola	cytosol, nucleus, plastid	20.63	41.06

Protein Annotations

EnsemblPlants:GSMUA_Achr2P17850_001	EnsemblPlants:GSMUA_Achr2T17850_001	EnsemblPlantsGene:GSMUA_Achr2G17850_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMPIT	ncoils:Coil	PANTHER:PTHR21433	PANTHER:PTHR21433:SF4	PFAM:PF07851	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002962A6E	UniProt:M0S8X6	MapMan:35.2	:	:

Description

transmembrane protein 120A, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G17850_001]

Coordinates

chr2:-:18336795..18345970

Molecular Weight (calculated)

46847.0 Da

IEP (calculated)

8.955

GRAVY (calculated)

0.219

Length

412 amino acids

Sequence
(BLAST)

001: MVESNALLEE AARLAEAARE LQEAAAILIS RTRNEEQSLR QRAVALESDL RRLQSSLDST VRKKGQSATG GGVDPKIAEK VDEELCRARC VINDGDVASL
101: LLSKTHGRFL KMFLGPVNVR ATRKEVQLKV KEEYNSYRDR TAFLFLLFPS TLLLLRSWVW DACLPALPVQ LYQVWLLYLY TTLALRENIL RVNGSDIRPW
201: WICHHYCAML MALISLTWEI KRQPDCAYKQ RGVQLFLMWA MMQGVSMLLQ NRYQRQRLYT RIALGKAKRM DVVWGETAGV EGQLWLLCPI LFILQGFEAY
301: VGLLLLRTAF VGVICEWQAS HCIKFYFDSD VIACGILLVL MAIGNFANTM QTLIAKSRFK AKMKRTRSNC LLLDCAAAAC STAFISFSAC PCILCLPLHT
401: CLRLIHAPIW FC

Best Arabidopsis Sequence Match ( AT4G10430.1 )
(BLAST)

001: MEVEEEVKQI IDEVKELHDS AASFISSSSQ QELSLRQKAS AVDSSIRRLH STIVSNKNLD PKLVEKLEED LHRARCMLVD GETSSFLPSK PQGRFVRMFC
101: GPVNVRALRK DVQLKVKEEY NRYRDKTALL FLFFPATLLI LRSYYWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRPWWLYH HYCAMAMALV
201: SLTWEIKGQP NCVQKQRGVH LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPILFIL QVFEAYVGLL LLRKTVTGVV
301: NEWQVMVCGI LLVVMAVGNF INTVETLMAK SRVKAKMKRS KSRAELN

Arabidopsis Description

TMPIT-like protein [Source:UniProtKB/TrEMBL;Acc:Q93XX0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.