Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10430.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT4G10430.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT4G10430.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT4G10430.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70882 | Canola | mitochondrion | 35.24 | 99.19 |
| Bra033173.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 97.42 | 98.27 |
| CDY70518 | Canola | endoplasmic reticulum, golgi, plasma membrane | 64.47 | 90.0 |
| AT4G10430.1 | Thale cress | cytosol, peroxisome, plasma membrane | 88.25 | 88.76 |
| CDX85978 | Canola | cytosol, peroxisome, plasma membrane | 80.23 | 85.63 |
| CDY62148 | Canola | plasma membrane | 72.21 | 85.42 |
| CDY62149 | Canola | extracellular, golgi | 41.55 | 84.3 |
| CDY44965 | Canola | cytosol, peroxisome, plasma membrane | 83.67 | 82.25 |
| CDX93786 | Canola | cytosol, peroxisome, plasma membrane | 68.48 | 81.02 |
| VIT_02s0025g03210.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 73.64 | 71.19 |
| KRH36308 | Soybean | cytosol, peroxisome, plasma membrane | 71.92 | 70.9 |
| KRG93048 | Soybean | cytosol, peroxisome, plasma membrane | 71.63 | 70.62 |
| Solyc03g096810.2.1 | Tomato | nucleus | 67.91 | 63.88 |
| CDY25256 | Canola | cytosol, nucleus, plastid | 37.82 | 63.77 |
| PGSC0003DMT400001473 | Potato | cytosol, peroxisome, plasma membrane | 67.34 | 63.34 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 64.76 | 61.41 |
| Os08t0152800-00 | Rice | peroxisome | 63.32 | 61.39 |
| Os02t0106800-01 | Rice | plasma membrane | 61.6 | 60.73 |
| Zm00001d024602_P001 | Maize | plasma membrane | 63.9 | 60.6 |
| EES14557 | Sorghum | peroxisome | 64.47 | 60.48 |
| HORVU7Hr1G071960.1 | Barley | nucleus, peroxisome, plasma membrane | 62.46 | 60.06 |
| EES04336 | Sorghum | cytosol | 60.46 | 59.6 |
| TraesCS6D01G028000.1 | Wheat | nucleus, peroxisome, plasma membrane | 61.6 | 59.39 |
| TraesCS7D01G298800.1 | Wheat | nucleus, peroxisome, plasma membrane | 61.89 | 59.18 |
| Zm00001d049571_P001 | Maize | peroxisome | 63.04 | 59.14 |
| TraesCS6A01G024600.1 | Wheat | nucleus, peroxisome, plasma membrane | 61.32 | 59.12 |
| TraesCS7A01G303400.1 | Wheat | nucleus, peroxisome, plasma membrane | 61.6 | 58.9 |
| TraesCS7B01G203600.1 | Wheat | nucleus, peroxisome, plasma membrane | 61.6 | 58.9 |
| GSMUA_Achr2P17850_001 | Banana | plasma membrane | 66.48 | 56.31 |
| HORVU6Hr1G004260.1 | Barley | cytosol | 57.59 | 54.47 |
| Zm00001d014951_P002 | Maize | cytosol | 53.87 | 52.22 |
| GSMUA_AchrUn_... | Banana | cytosol | 13.47 | 43.12 |
Protein Annotations
| EnsemblPlants:CDX94258 | EnsemblPlantsGene:GSBRNA2T00157256001 | GO:A0A078E484 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMPIT | PANTHER:PTHR21433 | PANTHER:PTHR21433:SF0 | PFAM:PF07851 | ProteinID:CDX94258 | ProteinID:CDX94258.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE1804 | MapMan:35.2 | : | : |
Description
BnaC02g29180D
Coordinates
chrLK031880:+:575282..578476
Molecular Weight (calculated)
39838.0 Da
IEP (calculated)
9.685
GRAVY (calculated)
0.006
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVEEEVKRM LEEVKELHDS AASFISSSSH QELTLRQKAT SVEASLRRLH STLASDKSLD PKLLEEDLHR ARCMLADGDL SSFLPSKPQA GRFVRMFLGP
101: VNVRASRKDI QLKVKEEYNS YRDKTALLFL FFPAALMILR SYYWDGCLPA FPVQLYEAWL LFLYAGLAMR ENVLRANGSD IRPWWLYHHY CAMGMALVSL
201: TWEIKGQPNC VQKQRGVHLF LQWAMMQGVA MLLQNRYQRQ RLYTRIALGK AQRMDVVWGE TAGVDGQLWL LCPILFILQQ GFQAYVGVLL LRAALTGVVA
301: EWQVMVCGIL LVVMAVGNFI NTVETLMAKS RVKAKMKKSK SRAELNHTS
101: VNVRASRKDI QLKVKEEYNS YRDKTALLFL FFPAALMILR SYYWDGCLPA FPVQLYEAWL LFLYAGLAMR ENVLRANGSD IRPWWLYHHY CAMGMALVSL
201: TWEIKGQPNC VQKQRGVHLF LQWAMMQGVA MLLQNRYQRQ RLYTRIALGK AQRMDVVWGE TAGVDGQLWL LCPILFILQQ GFQAYVGVLL LRAALTGVVA
301: EWQVMVCGIL LVVMAVGNFI NTVETLMAKS RVKAKMKKSK SRAELNHTS
001: MEVEEEVKQI IDEVKELHDS AASFISSSSQ QELSLRQKAS AVDSSIRRLH STIVSNKNLD PKLVEKLEED LHRARCMLVD GETSSFLPSK PQGRFVRMFC
101: GPVNVRALRK DVQLKVKEEY NRYRDKTALL FLFFPATLLI LRSYYWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRPWWLYH HYCAMAMALV
201: SLTWEIKGQP NCVQKQRGVH LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPILFIL QVFEAYVGLL LLRKTVTGVV
301: NEWQVMVCGI LLVVMAVGNF INTVETLMAK SRVKAKMKRS KSRAELN
101: GPVNVRALRK DVQLKVKEEY NRYRDKTALL FLFFPATLLI LRSYYWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRPWWLYH HYCAMAMALV
201: SLTWEIKGQP NCVQKQRGVH LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPILFIL QVFEAYVGLL LLRKTVTGVV
301: NEWQVMVCGI LLVVMAVGNF INTVETLMAK SRVKAKMKRS KSRAELN
Arabidopsis Description
TMPIT-like protein [Source:UniProtKB/TrEMBL;Acc:Q93XX0]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.