Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024602_P001 | Maize | plasma membrane | 90.32 | 91.3 |
| EES14557 | Sorghum | peroxisome | 91.13 | 91.13 |
| Os08t0152800-00 | Rice | peroxisome | 82.8 | 85.56 |
| HORVU7Hr1G071960.1 | Barley | nucleus, peroxisome, plasma membrane | 80.65 | 82.64 |
| TraesCS7A01G303400.1 | Wheat | nucleus, peroxisome, plasma membrane | 79.57 | 81.1 |
| TraesCS7D01G298800.1 | Wheat | nucleus, peroxisome, plasma membrane | 79.57 | 81.1 |
| TraesCS7B01G203600.1 | Wheat | nucleus, peroxisome, plasma membrane | 79.3 | 80.82 |
| CDY70518 | Canola | endoplasmic reticulum, golgi, plasma membrane | 51.34 | 76.4 |
| CDY70882 | Canola | mitochondrion | 25.27 | 75.81 |
| CDY62149 | Canola | extracellular, golgi | 33.87 | 73.26 |
| CDY62148 | Canola | plasma membrane | 56.99 | 71.86 |
| Bra036730.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.41 | 68.63 |
| CDX85978 | Canola | cytosol, peroxisome, plasma membrane | 59.68 | 67.89 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 66.13 | 66.85 |
| KRG93048 | Soybean | cytosol, peroxisome, plasma membrane | 61.56 | 64.69 |
| KRH36308 | Soybean | cytosol, peroxisome, plasma membrane | 61.56 | 64.69 |
| Bra040009.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 60.22 | 64.55 |
| VIT_02s0025g03210.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 62.63 | 64.54 |
| Bra033173.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.68 | 64.16 |
| CDY44965 | Canola | cytosol, peroxisome, plasma membrane | 60.75 | 63.66 |
| Solyc03g096810.2.1 | Tomato | nucleus | 63.44 | 63.61 |
| PGSC0003DMT400001473 | Potato | cytosol, peroxisome, plasma membrane | 63.17 | 63.34 |
| AT4G10430.1 | Thale cress | cytosol, peroxisome, plasma membrane | 58.87 | 63.11 |
| CDX94258 | Canola | cytosol, peroxisome, plasma membrane | 59.14 | 63.04 |
| AT1G33230.2 | Thale cress | plastid | 58.06 | 61.02 |
| GSMUA_Achr2P17850_001 | Banana | plasma membrane | 67.2 | 60.68 |
| CDX93786 | Canola | cytosol, peroxisome, plasma membrane | 47.58 | 60.0 |
| Zm00001d014951_P002 | Maize | cytosol | 55.91 | 57.78 |
| CDY25256 | Canola | cytosol, nucleus, plastid | 20.7 | 37.2 |
Protein Annotations
| EnsemblPlants:Zm00001d049571_P001 | EnsemblPlants:Zm00001d049571_T001 | EnsemblPlantsGene:Zm00001d049571 | EntrezGene:103653083 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:TMPIT | ncoils:Coil | PANTHER:PTHR21433 | PANTHER:PTHR21433:SF4 | PFAM:PF07851 |
| ProteinID:AQK50820.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002215F47 | UniProt:K7US11 | MapMan:35.2 |
Description
TMPIT-like protein
Coordinates
chr4:+:35620656..35625333
Molecular Weight (calculated)
41722.0 Da
IEP (calculated)
9.813
GRAVY (calculated)
-0.088
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEERKGGG GGGDDGAAAA ARAAEQAREL QDAAAALLTR TRAEEEALRR RAAALQGELR RLREAAAAHA DSEKVEEDLD RATCLITEGD VASLLPSKTQ
101: GTFLRMFLGP VNLRAPRKEV QLKVKEEYNS YRDRTALLFL GFPVILLFLR QWLWNRCFPA LPVQLYQAWL LFLYTSLALR ENILRVNGSD IRPWWILHHY
201: SAMLMSVISL TWEIKGQPNC ARKQRGVELF LCWAIMQGFV MMLQNRYQRQ RLYTRIALGK AKRMDVVWGE TAGVEGQLLL LCPLLFLLQG FEGYVGFLLL
301: RTAHTGVVPE WQVVVCGILL ISMAIGNFAN TLDTLMAKSR FKAKMKKSKG KRDLDTCPSP TGSSPTDSAT RA
101: GTFLRMFLGP VNLRAPRKEV QLKVKEEYNS YRDRTALLFL GFPVILLFLR QWLWNRCFPA LPVQLYQAWL LFLYTSLALR ENILRVNGSD IRPWWILHHY
201: SAMLMSVISL TWEIKGQPNC ARKQRGVELF LCWAIMQGFV MMLQNRYQRQ RLYTRIALGK AKRMDVVWGE TAGVEGQLLL LCPLLFLLQG FEGYVGFLLL
301: RTAHTGVVPE WQVVVCGILL ISMAIGNFAN TLDTLMAKSR FKAKMKKSKG KRDLDTCPSP TGSSPTDSAT RA
001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
Arabidopsis Description
TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.