Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- peroxisome 2
- plastid 1
- plasma membrane 2
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400071510 | |
| PGSC0003DMT400073246 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10430.1 | PGSC0003DMT400071510 | AT4G19030.1 | 21798944 |
| AT4G10430.1 | PGSC0003DMT400073246 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g096810.2.1 | Tomato | nucleus | 98.65 | 98.65 |
| CDY70518 | Canola | endoplasmic reticulum, golgi, plasma membrane | 52.56 | 78.0 |
| CDY70882 | Canola | mitochondrion | 25.88 | 77.42 |
| VIT_02s0025g03210.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 71.43 | 73.41 |
| CDY62149 | Canola | extracellular, golgi | 33.96 | 73.26 |
| CDY62148 | Canola | plasma membrane | 57.68 | 72.54 |
| Bra036730.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 61.99 | 71.43 |
| CDX85978 | Canola | cytosol, peroxisome, plasma membrane | 61.19 | 69.42 |
| Bra033173.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 64.15 | 68.79 |
| AT4G10430.1 | Thale cress | cytosol, peroxisome, plasma membrane | 63.61 | 68.01 |
| KRH36308 | Soybean | cytosol, peroxisome, plasma membrane | 64.69 | 67.8 |
| KRG93048 | Soybean | cytosol, peroxisome, plasma membrane | 64.42 | 67.51 |
| CDX94258 | Canola | cytosol, peroxisome, plasma membrane | 63.34 | 67.34 |
| Bra040009.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 62.8 | 67.15 |
| CDY44965 | Canola | cytosol, peroxisome, plasma membrane | 63.88 | 66.76 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 65.77 | 66.3 |
| Os08t0152800-00 | Rice | peroxisome | 63.61 | 65.56 |
| HORVU7Hr1G071960.1 | Barley | nucleus, peroxisome, plasma membrane | 62.8 | 64.19 |
| Zm00001d024602_P001 | Maize | plasma membrane | 63.34 | 63.86 |
| TraesCS7B01G203600.1 | Wheat | nucleus, peroxisome, plasma membrane | 62.8 | 63.84 |
| CDX93786 | Canola | cytosol, peroxisome, plasma membrane | 50.67 | 63.73 |
| TraesCS7D01G298800.1 | Wheat | nucleus, peroxisome, plasma membrane | 62.53 | 63.56 |
| TraesCS7A01G303400.1 | Wheat | nucleus, peroxisome, plasma membrane | 62.53 | 63.56 |
| EES04336 | Sorghum | cytosol | 60.65 | 63.56 |
| Os02t0106800-01 | Rice | plasma membrane | 60.38 | 63.28 |
| Zm00001d049571_P001 | Maize | peroxisome | 63.34 | 63.17 |
| EES14557 | Sorghum | peroxisome | 62.8 | 62.63 |
| TraesCS6A01G024600.1 | Wheat | nucleus, peroxisome, plasma membrane | 60.92 | 62.43 |
| TraesCS6D01G028000.1 | Wheat | nucleus, peroxisome, plasma membrane | 60.38 | 61.88 |
| AT1G33230.2 | Thale cress | plastid | 58.76 | 61.58 |
| GSMUA_Achr2P17850_001 | Banana | plasma membrane | 67.39 | 60.68 |
| HORVU6Hr1G004260.1 | Barley | cytosol | 56.33 | 56.64 |
| Zm00001d014951_P002 | Maize | cytosol | 54.18 | 55.83 |
| CDY25256 | Canola | cytosol, nucleus, plastid | 22.37 | 40.1 |
| GSMUA_AchrUn_... | Banana | cytosol | 11.05 | 37.61 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400001473 | EnsemblPlantsGene:PGSC0003DMG400000544 | EntrezGene:102600351 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMPIT | PANTHER:PTHR21433 | PANTHER:PTHR21433:SF4 | PFAM:PF07851 | PGSC:PGSC0003DMG400000544 | RefSeq:XP_006347552.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000294C8D2 | UniProt:M0ZII9 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000544]
Coordinates
chr3:+:47060971..47065515
Molecular Weight (calculated)
41944.3 Da
IEP (calculated)
10.020
GRAVY (calculated)
-0.088
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDGDSITTA VGQNLVERDF VEEASRIVEQ AKELQDAASS LISRTTREED SLRQKAKSLD SCVQGLRSAV RKSKLDPNQA EKLEEELFKA SYVLSEGDAA
101: AFLPNKSHGG FLRMFLGPIN VRANRKDVQL KVKEEYNSFR DRTAYLFLLF PSVLLVLRSW MWDGCLPALP VQLYQAWLLY LYTGLALREN ILRANGSDIR
201: PWWIKHHYCA MAMALISLTW EIEREPNCSQ KQRGVQLFLK WAIMQGVAML LQNRYQRQRL YTRIALGKAR RMDVVWGETA GVDGQLLLLF PVLFILQGFE
301: AYVGVLLLKT AFIGVVSEWQ VVTCGILLII MAAGNFANTV KTLVTKSRVK AKMKRGKSKQ DLKSESPAKS S
101: AFLPNKSHGG FLRMFLGPIN VRANRKDVQL KVKEEYNSFR DRTAYLFLLF PSVLLVLRSW MWDGCLPALP VQLYQAWLLY LYTGLALREN ILRANGSDIR
201: PWWIKHHYCA MAMALISLTW EIEREPNCSQ KQRGVQLFLK WAIMQGVAML LQNRYQRQRL YTRIALGKAR RMDVVWGETA GVDGQLLLLF PVLFILQGFE
301: AYVGVLLLKT AFIGVVSEWQ VVTCGILLII MAAGNFANTV KTLVTKSRVK AKMKRGKSKQ DLKSESPAKS S
001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
Arabidopsis Description
TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.