Factsheet for VIT_02s0025g03210.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10430.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70518	Canola	endoplasmic reticulum, golgi, plasma membrane	58.73	84.8
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	82.27	83.9
KRG93048	Soybean	cytosol, peroxisome, plasma membrane	81.99	83.62
CDY70882	Canola	mitochondrion	28.53	83.06
CDY62149	Canola	extracellular, golgi	39.06	81.98
CDY62148	Canola	plasma membrane	65.93	80.68
Bra036730.1-P	Field mustard	cytosol, peroxisome, plasma membrane	69.25	77.64
CDX85978	Canola	cytosol, peroxisome, plasma membrane	69.25	76.45
AT4G10430.1	Thale cress	cytosol, peroxisome, plasma membrane	73.13	76.08
Bra040009.1-P	Field mustard	cytosol, peroxisome, plasma membrane	72.58	75.5
Bra033173.1-P	Field mustard	cytosol, peroxisome, plasma membrane	71.75	74.86
CDY44965	Canola	cytosol, peroxisome, plasma membrane	72.85	74.08
CDX94258	Canola	cytosol, peroxisome, plasma membrane	71.19	73.64
Solyc03g096810.2.1	Tomato	nucleus	73.41	71.43
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	73.41	71.43
CDX93786	Canola	cytosol, peroxisome, plasma membrane	57.34	70.17
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	70.36	69.02
AT1G33230.2	Thale cress	plastid	66.2	67.51
Os08t0152800-00	Rice	peroxisome	65.1	65.28
EES14557	Sorghum	peroxisome	66.76	64.78
HORVU7Hr1G071960.1	Barley	nucleus, peroxisome, plasma membrane	65.1	64.74
Zm00001d024602_P001	Maize	plasma membrane	65.37	64.13
TraesCS7D01G298800.1	Wheat	nucleus, peroxisome, plasma membrane	64.82	64.11
TraesCS7B01G203600.1	Wheat	nucleus, peroxisome, plasma membrane	64.82	64.11
TraesCS7A01G303400.1	Wheat	nucleus, peroxisome, plasma membrane	64.82	64.11
Os02t0106800-01	Rice	plasma membrane	62.33	63.56
Zm00001d049571_P001	Maize	peroxisome	64.54	62.63
GSMUA_Achr2P17850_001	Banana	plasma membrane	71.47	62.62
TraesCS6A01G024600.1	Wheat	nucleus, peroxisome, plasma membrane	62.6	62.43
TraesCS6D01G028000.1	Wheat	nucleus, peroxisome, plasma membrane	62.6	62.43
EES04336	Sorghum	cytosol	60.94	62.15
HORVU6Hr1G004260.1	Barley	cytosol	58.45	57.18
Zm00001d014951_P002	Maize	cytosol	54.57	54.72
CDY25256	Canola	cytosol, nucleus, plastid	24.93	43.48
GSMUA_AchrUn_...	Banana	cytosol	12.19	40.37

Protein Annotations

EntrezGene:100259865	wikigene:100259865	MapMan:35.2	ProteinID:CBI34643	ProteinID:CBI34643.3	UniProt:D7TVW8
EMBL:FN596251	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100259865	wikigene:LOC100259865
PFAM:PF07851	PANTHER:PTHR21433	PANTHER:PTHR21433:SF0	InterPro:TMPIT	TMHMM:TMhelix	UniParc:UPI00015CC5FB
ArrayExpress:VIT_02s0025g03210	EnsemblPlantsGene:VIT_02s0025g03210	EnsemblPlants:VIT_02s0025g03210.t01	unigene:Vvi.21223	RefSeq:XP_002276903	RefSeq:XP_002276903.2
RefSeq:XP_010660494.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:2727658..2744219

Molecular Weight (calculated)

40980.3 Da

IEP (calculated)

9.629

GRAVY (calculated)

0.029

Length

361 amino acids

Sequence
(BLAST)

001: MGDSATLEQS AGNIDEQVSG VVEQAKELQD AASSHISRTS VEEQALRKSA LSLDSNIHRL RSLIDSLHRN KILDPKLADK LDEDLQRARC ILVDGDASSF
101: LPGNAQGGFL RMFLGPINVH ATRKDVQLKV KEEYNSYRDR TALLFLLFPS TLLILRSWIW DGCLPTFPVQ LYQAWLLFLY TGLALRENIL RVNGSDIRPW
201: WIYHHYCAMI MALVSLTWEI KGQPNCAQKQ RGVQLFLQWA MMQGVAMLLQ NRYQRQRLYT RIALGKAKRM DVVWGETAGV DGQLWLLCPI LFILQGFEAY
301: VGLLLLKTAF VGVVSEWQVV FCGVLLVLMA VGNFANTVQT LMVKSRFKAK MKRSKSKQEL N

Best Arabidopsis Sequence Match ( AT4G10430.1 )
(BLAST)

001: MEVEEEVKQI IDEVKELHDS AASFISSSSQ QELSLRQKAS AVDSSIRRLH STIVSNKNLD PKLVEKLEED LHRARCMLVD GETSSFLPSK PQGRFVRMFC
101: GPVNVRALRK DVQLKVKEEY NRYRDKTALL FLFFPATLLI LRSYYWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRPWWLYH HYCAMAMALV
201: SLTWEIKGQP NCVQKQRGVH LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPILFIL QVFEAYVGLL LLRKTVTGVV
301: NEWQVMVCGI LLVVMAVGNF INTVETLMAK SRVKAKMKRS KSRAELN

Arabidopsis Description

TMPIT-like protein [Source:UniProtKB/TrEMBL;Acc:Q93XX0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.