Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10430.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25256 | Canola | cytosol, nucleus, plastid | 40.37 | 21.26 |
| CDY62148 | Canola | plasma membrane | 40.37 | 14.92 |
| CDX85978 | Canola | cytosol, peroxisome, plasma membrane | 42.2 | 14.07 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 46.79 | 13.86 |
| Bra036730.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 40.37 | 13.66 |
| Bra033173.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 43.12 | 13.58 |
| CDX94258 | Canola | cytosol, peroxisome, plasma membrane | 43.12 | 13.47 |
| AT4G10430.1 | Thale cress | cytosol, peroxisome, plasma membrane | 42.2 | 13.26 |
| Bra040009.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 42.2 | 13.26 |
| CDX93786 | Canola | cytosol, peroxisome, plasma membrane | 35.78 | 13.22 |
| AT1G33230.2 | Thale cress | plastid | 40.37 | 12.43 |
| KRH36308 | Soybean | cytosol, peroxisome, plasma membrane | 40.37 | 12.43 |
| CDY44965 | Canola | cytosol, peroxisome, plasma membrane | 40.37 | 12.39 |
| GSMUA_Achr2P17850_001 | Banana | plasma membrane | 46.79 | 12.38 |
| VIT_02s0025g03210.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 40.37 | 12.19 |
| KRG93048 | Soybean | cytosol, peroxisome, plasma membrane | 39.45 | 12.15 |
| Solyc03g096810.2.1 | Tomato | nucleus | 38.53 | 11.32 |
| PGSC0003DMT400001473 | Potato | cytosol, peroxisome, plasma membrane | 37.61 | 11.05 |
| CDY70518 | Canola | endoplasmic reticulum, golgi, plasma membrane | 23.85 | 10.4 |
| CDY70882 | Canola | mitochondrion | 3.67 | 3.23 |
| CDY62149 | Canola | extracellular, golgi | 4.59 | 2.91 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP08950_001 | EnsemblPlants:GSMUA_AchrUn_randomT08950_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG08950_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMPIT | PANTHER:PTHR21433 | PANTHER:PTHR21433:SF4 | PFAM:PF07851 | TMHMM:TMhelix | UniParc:UPI000295ABE7 |
| UniProt:M0U7K5 | MapMan:35.2 | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG08950_001]
Coordinates
chrchrUn_random:-:41630879..41631391
Molecular Weight (calculated)
12755.6 Da
IEP (calculated)
9.133
GRAVY (calculated)
0.157
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MFHEQFGLFI TQVEEELNRA RRYALNDDDA ASLLPSKAQG RFLKMFLGAV NVRATRKEVQ LKVKEYNNYK SILLARFIAT SIIHLHFFLG FDWLCGLYIL
101: IFHGHVICY
101: IFHGHVICY
001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
Arabidopsis Description
TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.