Factsheet for Bra000340.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003423.1-P
Bra007547.1-P
Bra014481.1-P
Bra026434.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44080.1	Bra030034.1-P	AT1G27300.1	21798944
AT2G44080.1	Bra032817.1-P	AT1G27300.1	21798944
AT2G44080.1	Bra003423.1-P	AT3G60600.1	21798944
AT2G44080.1	Bra007547.1-P	AT3G60600.1	21798944
AT2G44080.1	Bra014481.1-P	AT3G60600.1	21798944
AT2G44080.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83441	Canola	cytosol, peroxisome, plasma membrane	97.08	97.08
Bra037667.1-P	Field mustard	cytosol, peroxisome, plastid	76.64	78.95
Bra004803.1-P	Field mustard	plasma membrane	61.31	77.06
AT2G44080.1	Thale cress	cytosol, peroxisome, plasma membrane	70.8	71.85
CDX95587	Canola	cytosol	94.16	69.35
Bra003394.1-P	Field mustard	plastid	51.09	62.5
Bra007491.1-P	Field mustard	extracellular, golgi, plasma membrane	46.72	60.38

Protein Annotations

EnsemblPlants:Bra000340.1	EnsemblPlants:Bra000340.1-P	EnsemblPlantsGene:Bra000340	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0040007	GO:GO:0046622	InterPro:ARGOS/ARL	PANTHER:PTHR36023	PANTHER:PTHR36023:SF3
SEG:seg	TMHMM:TMhelix	UniParc:UPI000253FDBC	UniProt:M4C812	MapMan:35.1	:

Description

AT2G44080 (E=3e-023) ARL | ARL (ARGOS-LIKE)

Coordinates

chrA03:+:10637781..10638194

Molecular Weight (calculated)

15505.3 Da

IEP (calculated)

10.348

GRAVY (calculated)

-0.006

Length

137 amino acids

Sequence
(BLAST)

001: MIREISSLQN DNVSIQDHNS SNIKNRNNMD MRRDSRQDMT FRGPTQAQMM SKQEYLQTLS SQNSTRRLIT KSSYFSLESM VVLVGLTASL LFLPLILPPL
101: PPPPFMLLLV PIGIMFLLMV LALMPSSNAK HVTGTYM

Best Arabidopsis Sequence Match ( AT2G44080.1 )
(BLAST)

001: MIREFSSLQN DIINIQEHYS LNNNMDVRGD HNRKNTSFRG SAPAPIMGKQ ELFRTLSSQN SPRRLISASY FSLESMVVLV GLTASLLILP LILPPLPPPP
101: FMLLLIPIGI MVLLMVLAFM PSSNSKHVSS SSTFM

Arabidopsis Description

ARLARGOS-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q8RXL7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.