CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX84933
CDX89063
CDX89333
CDX94330
CDY03907
CDY15722
CDY27605
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44080.1	CDX84933	AT1G27300.1	21798944
AT2G44080.1	CDY03907	AT1G27300.1	21798944
AT2G44080.1	CDY15722	AT1G27300.1	21798944
AT2G44080.1	CDY27605	AT1G27300.1	21798944
AT2G44080.1	CDX67837	AT3G60600.1	21798944
AT2G44080.1	CDX71796	AT3G60600.1	21798944
AT2G44080.1	CDX89063	AT3G60600.1	21798944
AT2G44080.1	CDY41153	AT3G60600.1	21798944
AT2G44080.1	CDY48365	AT3G60600.1	21798944
AT2G44080.1	CDX89333	AT4G26455.1	21798944
AT2G44080.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83441	Canola	cytosol, peroxisome, plasma membrane	71.51	97.08
Bra000340.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	69.35	94.16
CDX79784	Canola	plasma membrane	45.7	77.98
CDY23416	Canola	cytosol, peroxisome, plasma membrane	55.91	77.61
CDY30454	Canola	cytosol, peroxisome, plastid	55.91	77.61
CDY17888	Canola	plasma membrane	45.16	77.06
AT2G44080.1	Thale cress	cytosol, peroxisome, plasma membrane	51.61	71.11
CDX98398	Canola	cytosol, peroxisome, plastid	43.55	60.0
CDX67816	Canola	cytosol, peroxisome, plastid	43.01	58.82

Protein Annotations

EnsemblPlants:CDX95587	EnsemblPlantsGene:GSBRNA2T00101448001	GO:A0A078E399	GO:GO:0008150	GO:GO:0040007	GO:GO:0046622
InterPro:ARGOS/ARL	PANTHER:PTHR36023	PANTHER:PTHR36023:SF3	ProteinID:CDX95587	ProteinID:CDX95587.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EF296E	MapMan:35.1	:	:	:

Description

BnaC03g24680D

Coordinates

chrLK031890:+:92744..93538

Molecular Weight (calculated)

21217.2 Da

IEP (calculated)

9.368

GRAVY (calculated)

-0.017

Length

186 amino acids

Sequence
(BLAST)

001: MFREIPSLQN DNVSIQDHTS SNIKNGNTMD MRRDNRQDMT FRGPTQAQMM SKQEYIQTLS SQNSTRRLIT KSSYFSLESM VVLVGLTASL LFLPLILPPL
101: PPPPFMLLLV PIGIMVLLMV LALMPSSNAK HVTGTYMRLK VRDRKQDYCY SFYIHSMIIG SIWISKNYAL EVAEIPTTCF TLEAEK

Best Arabidopsis Sequence Match ( AT2G44080.1 )
(BLAST)

001: MIREFSSLQN DIINIQEHYS LNNNMDVRGD HNRKNTSFRG SAPAPIMGKQ ELFRTLSSQN SPRRLISASY FSLESMVVLV GLTASLLILP LILPPLPPPP
101: FMLLLIPIGI MVLLMVLAFM PSSNSKHVSS SSTFM

Arabidopsis Description

ARLARGOS-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q8RXL7]
SUBAcon: [cytosol,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.