Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67816 | Canola | cytosol, peroxisome, plastid | 97.04 | 96.32 |
| AT3G59900.1 | Thale cress | plastid | 74.07 | 76.92 |
| CDY30454 | Canola | cytosol, peroxisome, plastid | 65.93 | 66.42 |
| CDX79784 | Canola | plasma membrane | 53.33 | 66.06 |
| CDY23416 | Canola | cytosol, peroxisome, plasma membrane | 65.19 | 65.67 |
| CDY17888 | Canola | plasma membrane | 52.59 | 65.14 |
| CDX83441 | Canola | cytosol, peroxisome, plasma membrane | 60.0 | 59.12 |
| CDX95587 | Canola | cytosol | 60.0 | 43.55 |
Protein Annotations
| EnsemblPlants:CDX98398 | EnsemblPlantsGene:GSBRNA2T00105982001 | GO:A0A078EGA8 | GO:GO:0008150 | GO:GO:0040007 | GO:GO:0046622 |
| InterPro:ARGOS/ARL | PANTHER:PTHR36023 | PANTHER:PTHR36023:SF3 | ProteinID:CDX98398 | ProteinID:CDX98398.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EE0F48 | MapMan:35.1 | : | : | : |
Description
BnaC06g17590D
Coordinates
chrLK031904:+:1096330..1097004
Molecular Weight (calculated)
15278.2 Da
IEP (calculated)
11.724
GRAVY (calculated)
0.133
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRKTPNLQN DIINIQERYS NNLVMDVGGG RNNRKNVNFR RPPAMTSENS KHELRRTFSS QKRLMIPANY FSLESLVILV GLTASLLILP LVLPPLPPPP
101: FMLLLIPIGI MVLLIFLAFM PSSSSRAKDV TRTFM
101: FMLLLIPIGI MVLLIFLAFM PSSSSRAKDV TRTFM
001: MIREISNLQK DIINIQDSYS NNRVMDVGRN NRKNMSFRSS PEKSKQELRR SFSAQKRMMI PANYFSLESL FLLVGLTASL LILPLVLPPL PPPPFMLLLV
101: PIGIMVLLVV LAFMPSSHSN ANTDVTCNFM
101: PIGIMVLLVV LAFMPSSHSN ANTDVTCNFM
Arabidopsis Description
ARGOSARGOS [Source:UniProtKB/TrEMBL;Acc:A0A178VK86]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.