Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41153 | Canola | cytosol | 99.16 | 99.16 |
| Bra007547.1-P | Field mustard | cytosol | 98.74 | 98.74 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 96.64 | 96.23 |
| CDY48365 | Canola | cytosol | 95.8 | 95.4 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 94.12 | 93.33 |
| AT3G60600.1 | Thale cress | cytosol | 89.5 | 83.2 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 81.93 | 81.59 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 81.09 | 80.75 |
| CDY56247 | Canola | cytosol | 80.25 | 79.58 |
| CDY57247 | Canola | cytosol | 80.25 | 79.58 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 79.83 | 78.84 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 79.41 | 78.42 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 72.69 | 72.38 |
| Solyc01g090910.2.1 | Tomato | nucleus | 68.49 | 69.96 |
| KRH76164 | Soybean | endoplasmic reticulum | 69.33 | 68.46 |
| KRH65384 | Soybean | cytosol | 69.33 | 68.46 |
| Solyc10g018350.1.1 | Tomato | cytosol | 65.55 | 65.55 |
| Zm00001d049553_P001 | Maize | plasma membrane | 62.18 | 60.66 |
| EES14570 | Sorghum | cytosol, nucleus, plasma membrane | 61.34 | 59.84 |
| TraesCS7A01G300700.1 | Wheat | cytosol | 60.92 | 59.67 |
| TraesCS7D01G296400.1 | Wheat | cytosol | 60.92 | 59.67 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 59.66 | 59.41 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 59.24 | 59.0 |
| Os08t0156700-01 | Rice | plasma membrane | 59.66 | 58.44 |
| GSMUA_Achr1P20280_001 | Banana | cytosol | 52.1 | 57.94 |
| PGSC0003DMT400066920 | Potato | cytosol | 64.29 | 57.3 |
| CDX91914 | Canola | cytosol | 56.72 | 57.2 |
| CDX74330 | Canola | cytosol | 56.3 | 56.78 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 53.36 | 55.95 |
| Solyc06g034220.2.1 | Tomato | nucleus | 52.52 | 55.07 |
| EES12559 | Sorghum | cytosol | 57.56 | 55.02 |
| TraesCS2A01G368500.1 | Wheat | cytosol | 57.56 | 55.02 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 57.56 | 55.02 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 57.14 | 54.62 |
| Os04t0534400-01 | Rice | cytosol | 57.14 | 54.4 |
| TraesCS2D01G365300.2 | Wheat | cytosol | 56.72 | 54.22 |
| Zm00001d051288_P001 | Maize | cytosol | 50.84 | 53.78 |
| Zm00001d017390_P001 | Maize | cytosol | 50.84 | 53.78 |
| TraesCS6D01G220300.1 | Wheat | cytosol | 51.26 | 53.51 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 51.26 | 53.51 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 50.84 | 53.07 |
| TraesCS6A01G237600.1 | Wheat | cytosol, golgi, plasma membrane | 50.84 | 53.07 |
| KXG31128 | Sorghum | cytosol | 50.0 | 52.89 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 60.08 | 51.07 |
| GSMUA_Achr11P... | Banana | cytosol | 42.44 | 50.5 |
| HORVU7Hr1G071270.2 | Barley | mitochondrion | 60.08 | 48.47 |
| Os02t0643000-01 | Rice | plasma membrane | 50.84 | 46.72 |
| PGSC0003DMT400076826 | Potato | cytosol | 11.76 | 46.67 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 56.72 | 45.3 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 19.33 | 45.1 |
| CDY40565 | Canola | cytosol | 39.5 | 43.12 |
| CDY28969 | Canola | cytosol | 39.5 | 43.12 |
| CDY43438 | Canola | cytosol | 39.5 | 42.73 |
| CDY25982 | Canola | cytosol | 39.08 | 42.27 |
| CDY33519 | Canola | cytosol | 38.66 | 42.2 |
| CDX77746 | Canola | cytosol | 38.66 | 42.2 |
| Zm00001d036342_P001 | Maize | cytosol | 39.5 | 37.6 |
| CDY06330 | Canola | cytosol | 42.44 | 29.45 |
| CDX93534 | Canola | cytosol | 42.02 | 26.95 |
| CDX95029 | Canola | cytosol | 41.18 | 26.2 |
| CDY32136 | Canola | cytosol | 40.76 | 25.53 |
| CDY31124 | Canola | cytosol | 40.76 | 25.46 |
| CDY22664 | Canola | plasma membrane | 42.44 | 23.82 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | GO:A0A078C460 | EnsemblPlants:CDX71796 | ProteinID:CDX71796 | ProteinID:CDX71796.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0016020 | EnsemblPlantsGene:GSBRNA2T00155512001 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 |
| InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI0004EE33E9 | InterPro:VAP | SEG:seg |
Description
BnaC08g30780D
Coordinates
chrLK031795:-:596896..599732
Molecular Weight (calculated)
26463.8 Da
IEP (calculated)
7.924
GRAVY (calculated)
-0.423
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNSELLTVE PLDLQFPFEL RKQISCSLYL TNKTDNHVAF KVKTTNPKKY CVRPNTGVVL PRSTCEVLVT MQAQKEAPSD MQCKDKFLLQ GVTASPGITA
101: KDVTPEMFSK EAGYLVEETK LRVTYVAPPQ PPSPVHEGSE EGSSPRASVS DNGQASEFSF QRFSADKVEP QEGTSEARAL ITKLTEEKQS AIQLNNKLQR
201: ELEQLRRDSK RSQSGIPLMY VLLFGLIGLI LGYIMKST
101: KDVTPEMFSK EAGYLVEETK LRVTYVAPPQ PPSPVHEGSE EGSSPRASVS DNGQASEFSF QRFSADKVEP QEGTSEARAL ITKLTEEKQS AIQLNNKLQR
201: ELEQLRRDSK RSQSGIPLMY VLLFGLIGLI LGYIMKST
001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT
Arabidopsis Description
PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.