CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
golgi 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89333
CDX89999
CDX94330
CDY15210
CDY15212
CDY15214
CDY15215

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25190.1	CDX89999	AT1G01010.1	21798944
AT3G25190.1	CDY15210	AT1G01010.1	21798944
AT3G25190.1	CDY15212	AT1G01010.1	21798944
AT3G25190.1	CDY15214	AT1G01010.1	21798944
AT3G25190.1	CDY15215	AT1G01010.1	21798944
AT3G25190.1	CDX89333	AT4G26455.1	21798944
AT3G25190.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013226.1-P	Field mustard	cytosol, peroxisome, plasma membrane	100.0	100.0
CDY15107	Canola	cytosol, peroxisome, plasma membrane	96.8	96.8
AT3G25190.1	Thale cress	cytosol, peroxisome, plastid	89.04	89.04
CDY04601	Canola	cytosol, peroxisome, vacuole	56.16	61.19
CDY29473	Canola	cytosol, peroxisome, vacuole	56.16	61.19
CDY71883	Canola	cytosol, peroxisome, vacuole	55.71	61.0
PGSC0003DMT400076566	Potato	extracellular, plasma membrane, vacuole	44.29	60.25
KRH42213	Soybean	cytosol, endoplasmic reticulum, plasma membrane	60.73	60.18
KRH42212	Soybean	plasma membrane	62.56	59.57
CDX88318	Canola	cytosol, peroxisome, vacuole	52.51	59.28
CDY45946	Canola	cytosol, peroxisome, vacuole	52.51	59.28
CDY20388	Canola	cytosol, peroxisome, vacuole	52.05	58.76
CDX87566	Canola	cytosol, peroxisome, vacuole	52.05	58.76
KRH58338	Soybean	cytosol, peroxisome, plasma membrane	52.51	58.67
TraesCS2D01G588000.1	Wheat	cytosol, plasma membrane, vacuole	51.14	58.33
VIT_12s0055g00860.t01	Wine grape	cytosol, peroxisome, plasma membrane	59.36	58.3
KRH28884	Soybean	cytosol, peroxisome, vacuole	61.19	58.26
Solyc01g104810.2.1	Tomato	plasma membrane	57.08	58.14
CDY01332	Canola	cytosol, peroxisome, vacuole	55.71	58.1
KRH58337	Soybean	plasma membrane	60.73	58.08
PGSC0003DMT400032701	Potato	plasma membrane	56.16	57.75
PGSC0003DMT400076565	Potato	plasma membrane	56.62	57.67
PGSC0003DMT400076567	Potato	plasma membrane	55.25	57.62
GSMUA_Achr9P29610_001	Banana	cytosol, peroxisome, vacuole	53.42	57.35
PGSC0003DMT400076561	Potato	cytosol, peroxisome, plasma membrane	57.08	57.34
Solyc01g104820.2.1	Tomato	plasma membrane	56.62	57.14
Solyc01g104800.2.1	Tomato	cytosol, peroxisome, plasma membrane	53.42	57.07
KRH42214	Soybean	extracellular	42.92	56.97
CDY33672	Canola	cytosol, peroxisome, vacuole	50.23	56.41
CDX96601	Canola	cytosol, peroxisome, vacuole	51.14	56.0
Solyc01g105260.1.1	Tomato	extracellular, vacuole	40.64	55.97
TraesCS2B01G610400.1	Wheat	cytosol, plasma membrane, vacuole	52.51	55.83
KRH76566	Soybean	cytosol, peroxisome, vacuole	59.36	55.79
VIT_12s0055g00870.t01	Wine grape	cytosol, peroxisome, plasma membrane	56.16	54.91
TraesCS2A01G434100.1	Wheat	cytosol, plasma membrane, vacuole	31.05	54.4
Os04t0686800-01	Rice	cytosol, peroxisome, vacuole	50.68	53.37
Zm00001d026679_P001	Maize	cytosol, peroxisome, vacuole	49.77	52.66
KRH58339	Soybean	cytosol, peroxisome, plasma membrane	53.42	52.47
VIT_12s0055g00850.t01	Wine grape	cytosol, peroxisome, plasma membrane	49.32	51.18
KRH42215	Soybean	cytosol, plastid, vacuole	53.42	51.09
TraesCS2B01G455000.1	Wheat	cytosol, plasma membrane, vacuole	42.01	50.55
Zm00001d002884_P001	Maize	cytosol, plasma membrane, vacuole	49.32	50.47
KRH58340	Soybean	plasma membrane	53.88	50.0
TraesCS2A01G434000.1	Wheat	cytosol, plasma membrane, vacuole	47.95	50.0
TraesCS2B01G455200.1	Wheat	cytosol, plasma membrane, vacuole	47.95	50.0
TraesCS2B01G455300.1	Wheat	cytosol, plasma membrane, vacuole	47.95	49.53
TraesCS2D01G431900.1	Wheat	cytosol, plasma membrane, vacuole	47.49	49.52
TraesCS2B01G455100.1	Wheat	cytosol, plasma membrane, vacuole	47.49	49.52
TraesCS2D01G432000.1	Wheat	cytosol, plasma membrane, vacuole	47.49	49.06
TraesCS2A01G433900.1	Wheat	cytosol, plasma membrane, vacuole	47.03	49.05
TraesCS2A01G434200.1	Wheat	cytosol, plasma membrane, vacuole	47.03	49.05
EES11692	Sorghum	cytosol, peroxisome, vacuole	49.77	47.6
TraesCS2B01G454900.1	Wheat	cytosol, plasma membrane, vacuole	45.21	46.7
KRH58336	Soybean	peroxisome, plasma membrane, vacuole	37.44	45.56
HORVU2Hr1G101180.2	Barley	cytosol	47.49	45.41
TraesCS4A01G209600.1	Wheat	plasma membrane	40.64	44.72
GSMUA_Achr10P...	Banana	plasma membrane	51.14	42.75
TraesCS4D01G110600.1	Wheat	cytosol, plasma membrane, vacuole	42.47	42.08
HORVU4Hr1G020210.1	Barley	cytosol, peroxisome	41.55	40.62
Os11t0161900-00	Rice	cytosol, nucleus, plasma membrane	37.9	40.1
PGSC0003DMT400076558	Potato	cytosol, peroxisome, plasma membrane	36.99	39.32
OQU82931	Sorghum	cytosol, peroxisome, plastid, vacuole	42.01	38.82
Solyc01g104830.2.1	Tomato	cytosol, peroxisome, plasma membrane	34.7	37.25
KRH42211	Soybean	cytosol, plasma membrane, vacuole	34.7	36.19
TraesCS4B01G112900.1	Wheat	endoplasmic reticulum	42.92	34.94

Protein Annotations

EnsemblPlants:CDY52279	EnsemblPlantsGene:GSBRNA2T00006684001	GO:A0A078IS41	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Ccc1_fam	PANTHER:PTHR31851	PANTHER:PTHR31851:SF6	PFAM:PF01988	ProteinID:CDY52279	ProteinID:CDY52279.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000254088A	UniProt:A0A078IS41	MapMan:24.2.12.3	:

Description

BnaA03g57720DBnaA03g57720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IS41]

Coordinates

chrLK033075:+:13776..14941

Molecular Weight (calculated)

23340.7 Da

IEP (calculated)

5.848

GRAVY (calculated)

0.351

Length

219 amino acids

Sequence
(BLAST)

001: MASNFELSER SSPKQHRISP RAEKEEVDYM QRAQWLRAAL LGSNDGLVTV ASLMMGVGSI KEDVKAMLLV GFAGLVAGAC SMAIGEFVSV CTQRDIETAQ
101: MKRAIETETS LSAIDEQDEE EKKERLPNPG QAALASALAF SVGAAMPLLA AVFIENHKVR MAVVAIVATL ALLVFGVTGA VLGKTSVFKS SVRVVIGGWM
201: AMVLTFGLTK FIGSEAMQI

Best Arabidopsis Sequence Match ( AT3G25190.1 )
(BLAST)

001: MTSNVQLSET NSPRNQKTRP RAEKEEVDYM QRAQWLRAAL LGANDGLVTV ASLMMGVGSI KEDVKAMLLV GFAGLVAGAC SMAIGEFVSV CTQRDIETAQ
101: MKRAIEHKTS LSAIDEQEEE EKKERLPNPG QAAIASALAF SVGAAMPLLG AVFIENHKVR MVVVAVVATI ALVVFGVTGA VLGKTSVVKS SVRVVIGGWM
201: AMALTFGLTK FIGSAAMQI

Arabidopsis Description

Vacuolar iron transporter homolog 2.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSF6]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.