Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- extracellular 3
- golgi 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g066170.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G25190.1 | Solyc07g066170.2.1 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g104800.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 86.16 | 66.83 |
| PGSC0003DMT400076567 | Potato | plasma membrane | 88.05 | 66.67 |
| PGSC0003DMT400032701 | Potato | plasma membrane | 89.31 | 66.67 |
| Solyc01g104810.2.1 | Tomato | plasma membrane | 85.53 | 63.26 |
| Solyc01g104820.2.1 | Tomato | plasma membrane | 69.18 | 50.69 |
| KRH42214 | Soybean | extracellular | 51.57 | 49.7 |
| VIT_12s0055g00870.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 64.78 | 45.98 |
| TraesCS2A01G434100.1 | Wheat | cytosol, plasma membrane, vacuole | 35.85 | 45.6 |
| VIT_12s0055g00860.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 63.52 | 45.29 |
| KRH42213 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 59.12 | 42.53 |
| Solyc04g051180.1.1 | Tomato | extracellular | 44.03 | 42.42 |
| KRH58338 | Soybean | cytosol, peroxisome, plasma membrane | 51.57 | 41.84 |
| Solyc01g104780.2.1 | Tomato | nucleus, peroxisome, vacuole | 55.35 | 41.51 |
| GSMUA_Achr9P29610_001 | Banana | cytosol, peroxisome, vacuole | 52.83 | 41.18 |
| CDY15107 | Canola | cytosol, peroxisome, plasma membrane | 56.6 | 41.1 |
| Bra013226.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 55.97 | 40.64 |
| CDY52279 | Canola | cytosol, peroxisome, plasma membrane | 55.97 | 40.64 |
| KRH58337 | Soybean | plasma membrane | 58.49 | 40.61 |
| KRH42212 | Soybean | plasma membrane | 58.49 | 40.43 |
| TraesCS2D01G588000.1 | Wheat | cytosol, plasma membrane, vacuole | 48.43 | 40.1 |
| VIT_12s0055g00850.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 52.83 | 39.81 |
| AT3G25190.1 | Thale cress | cytosol, peroxisome, plastid | 54.72 | 39.73 |
| KRH28884 | Soybean | cytosol, peroxisome, vacuole | 56.6 | 39.13 |
| Os04t0686800-01 | Rice | cytosol, peroxisome, vacuole | 49.69 | 37.98 |
| KRH76566 | Soybean | cytosol, peroxisome, vacuole | 55.35 | 37.77 |
| TraesCS2B01G610400.1 | Wheat | cytosol, plasma membrane, vacuole | 48.43 | 37.38 |
| KRH42215 | Soybean | cytosol, plastid, vacuole | 51.57 | 35.81 |
| KRH58339 | Soybean | cytosol, peroxisome, plasma membrane | 49.69 | 35.43 |
| Zm00001d002884_P001 | Maize | cytosol, plasma membrane, vacuole | 46.54 | 34.58 |
| KRH58340 | Soybean | plasma membrane | 50.94 | 34.32 |
| Zm00001d026679_P001 | Maize | cytosol, peroxisome, vacuole | 44.65 | 34.3 |
| Solyc01g104830.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 43.4 | 33.82 |
| TraesCS2B01G455300.1 | Wheat | cytosol, plasma membrane, vacuole | 44.65 | 33.49 |
| TraesCS2D01G431900.1 | Wheat | cytosol, plasma membrane, vacuole | 44.03 | 33.33 |
| TraesCS2A01G434000.1 | Wheat | cytosol, plasma membrane, vacuole | 44.03 | 33.33 |
| TraesCS2B01G455100.1 | Wheat | cytosol, plasma membrane, vacuole | 44.03 | 33.33 |
| TraesCS2B01G455200.1 | Wheat | cytosol, plasma membrane, vacuole | 44.03 | 33.33 |
| TraesCS2A01G433900.1 | Wheat | cytosol, plasma membrane, vacuole | 43.4 | 32.86 |
| TraesCS2A01G434200.1 | Wheat | cytosol, plasma membrane, vacuole | 43.4 | 32.86 |
| TraesCS2D01G432000.1 | Wheat | cytosol, plasma membrane, vacuole | 43.4 | 32.55 |
| EES11692 | Sorghum | cytosol, peroxisome, vacuole | 46.54 | 32.31 |
| GSMUA_Achr10P... | Banana | plasma membrane | 52.2 | 31.68 |
| KRH58336 | Soybean | peroxisome, plasma membrane, vacuole | 35.85 | 31.67 |
| TraesCS4A01G209600.1 | Wheat | plasma membrane | 39.62 | 31.66 |
| HORVU2Hr1G101180.2 | Barley | cytosol | 44.65 | 31.0 |
| TraesCS2B01G454900.1 | Wheat | cytosol, plasma membrane, vacuole | 40.88 | 30.66 |
| TraesCS2B01G455000.1 | Wheat | cytosol, plasma membrane, vacuole | 33.96 | 29.67 |
| TraesCS4D01G110600.1 | Wheat | cytosol, plasma membrane, vacuole | 38.99 | 28.05 |
| Os11t0161900-00 | Rice | cytosol, nucleus, plasma membrane | 35.85 | 27.54 |
| HORVU4Hr1G020210.1 | Barley | cytosol, peroxisome | 38.36 | 27.23 |
| OQU82931 | Sorghum | cytosol, peroxisome, plastid, vacuole | 39.62 | 26.58 |
| KRH42211 | Soybean | cytosol, plasma membrane, vacuole | 32.08 | 24.29 |
| Solyc02g068260.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 40.88 | 23.13 |
| TraesCS4B01G112900.1 | Wheat | endoplasmic reticulum | 38.99 | 23.05 |
Protein Annotations
| MapMan:24.2.12.3 | InterPro:Ccc1_fam | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005381 | GO:GO:0005384 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006880 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019725 | GO:GO:0030026 | GO:GO:0034755 | GO:GO:0071281 |
| GO:GO:0071421 | UniProt:K4B296 | PFAM:PF01988 | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF30 | EnsemblPlantsGene:Solyc01g105260.1 |
| EnsemblPlants:Solyc01g105260.1.1 | TMHMM:TMhelix | UniParc:UPI0002768D92 | : | : | : |
Description
No Description!
Coordinates
chr1:-:93493252..93493731
Molecular Weight (calculated)
16706.8 Da
IEP (calculated)
10.368
GRAVY (calculated)
0.487
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVGAVQENV KTMILTVSAG LFAGACSMAI GEFVSVYSQL DIERAQMKRD KATRGQKREH EEGNKKQLPN LFQAAVASTF SLGAIVPILA AAFIANHKLR
101: LAMIVAAVSL ASLAYGAIGS FLGKSPMVKS CARVLIGGWM SMAITFGLTK LIGSTGLEI
101: LAMIVAAVSL ASLAYGAIGS FLGKSPMVKS CARVLIGGWM SMAITFGLTK LIGSTGLEI
001: MESHNVSNSL NLDMEMDQEK AFDYSKRAQW LRAAVLGAND GLVSTASLMM GVGAVKQDVK VMILSGFAGL VAGACSMAIG EFVSVYSQYD IEVAQMKREN
101: GGQVEKEKLP SPMQAAAASA LAFSLGAIVP LMAAAFVKDY HVRIGAIVAA VTLALVMFGW LGAVLGKAPV FKSSARVLIG GWLAMAVTFG LTKLIGTHSL
101: GGQVEKEKLP SPMQAAAASA LAFSLGAIVP LMAAAFVKDY HVRIGAIVAA VTLALVMFGW LGAVLGKAPV FKSSARVLIG GWLAMAVTFG LTKLIGTHSL
Arabidopsis Description
Vacuolar iron transporter homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPU9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.