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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
  • golgi 2
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, golgi, mitochondrion, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
 extracellular: 29876421
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400008929 Potato cytosol, peroxisome, vacuole 92.12 66.96
KRH35158 Soybean plasma membrane 66.67 55.56
VIT_18s0076g00320.t01 Wine grape cytosol, peroxisome, vacuole 73.94 55.2
KRG91640 Soybean cytosol, peroxisome, vacuole 72.73 54.79
KRH08706 Soybean cytosol, peroxisome, vacuole 72.12 51.07
KRH70313 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 71.52 49.37
GSMUA_Achr9P29610_001 Banana cytosol, peroxisome, vacuole 59.39 48.04
TraesCS2B01G455000.1 Wheat cytosol, plasma membrane, vacuole 52.73 47.8
Solyc01g104800.2.1 Tomato cytosol, peroxisome, plasma membrane 58.18 46.83
TraesCS2D01G588000.1 Wheat cytosol, plasma membrane, vacuole 53.94 46.35
Solyc01g104810.2.1 Tomato plasma membrane 59.39 45.58
Solyc01g104780.2.1 Tomato nucleus, peroxisome, vacuole 57.58 44.81
Solyc01g104820.2.1 Tomato plasma membrane 58.18 44.24
Solyc01g105260.1.1 Tomato extracellular, vacuole 42.42 44.03
Os04t0686800-01 Rice cytosol, peroxisome, vacuole 55.15 43.75
TraesCS2B01G610400.1 Wheat cytosol, plasma membrane, vacuole 54.55 43.69
TraesCS2B01G454900.1 Wheat cytosol, plasma membrane, vacuole 55.76 43.4
Zm00001d026679_P001 Maize cytosol, peroxisome, vacuole 53.94 43.0
TraesCS2D01G431900.1 Wheat cytosol, plasma membrane, vacuole 53.94 42.38
TraesCS2B01G455200.1 Wheat cytosol, plasma membrane, vacuole 53.94 42.38
TraesCS2A01G434000.1 Wheat cytosol, plasma membrane, vacuole 53.94 42.38
TraesCS2B01G455100.1 Wheat cytosol, plasma membrane, vacuole 53.94 42.38
TraesCS2B01G455300.1 Wheat cytosol, plasma membrane, vacuole 53.94 41.98
TraesCS2A01G434200.1 Wheat cytosol, plasma membrane, vacuole 52.73 41.43
TraesCS2A01G433900.1 Wheat cytosol, plasma membrane, vacuole 52.73 41.43
Zm00001d002884_P001 Maize cytosol, plasma membrane, vacuole 53.33 41.12
TraesCS2D01G432000.1 Wheat cytosol, plasma membrane, vacuole 52.73 41.04
TraesCS2A01G434100.1 Wheat cytosol, plasma membrane, vacuole 30.91 40.8
EES11692 Sorghum cytosol, peroxisome, vacuole 56.36 40.61
TraesCS4A01G209600.1 Wheat plasma membrane 46.67 38.69
HORVU2Hr1G101180.2 Barley cytosol 53.33 38.43
Os11t0161900-00 Rice cytosol, nucleus, plasma membrane 46.67 37.2
GSMUA_Achr10P... Banana plasma membrane 58.79 37.02
TraesCS4D01G110600.1 Wheat cytosol, plasma membrane, vacuole 47.27 35.29
Solyc01g104830.2.1 Tomato cytosol, peroxisome, plasma membrane 43.64 35.29
HORVU4Hr1G020210.1 Barley cytosol, peroxisome 46.67 34.38
OQU82931 Sorghum cytosol, peroxisome, plastid, vacuole 46.06 32.07
TraesCS4B01G112900.1 Wheat endoplasmic reticulum 47.88 29.37
Solyc02g068260.1.1 Tomato cytosol, peroxisome, plasma membrane 41.21 24.2
Protein Annotations
MapMan:24.2.12.3InterPro:Ccc1_famGO:GO:0003674GO:GO:0005215GO:GO:0005381GO:GO:0005384
GO:GO:0005575GO:GO:0005623GO:GO:0006810GO:GO:0006880GO:GO:0008150GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0019725GO:GO:0030026GO:GO:0034755GO:GO:0071281
GO:GO:0071421UniProt:K4BS80PFAM:PF01988PANTHER:PTHR31851PANTHER:PTHR31851:SF30EnsemblPlantsGene:Solyc04g051180.1
EnsemblPlants:Solyc04g051180.1.1TMHMM:TMhelixUniParc:UPI0002766F9ESEG:seg::
Description
No Description!
Coordinates
chr4:-:49942916..49943413
Molecular Weight (calculated)
17821.6 Da
IEP (calculated)
5.783
GRAVY (calculated)
0.221
Length
165 amino acids
Sequence
(BLAST)
001: MEQQQISLDH QQVEEKEFDY SKRSQWLRAA VLGANDGLVS TASLIMGISA VKKDIKVVIL TVFAGLVAGA CSMAIGEFVS VYSQLDIEIA QMKRDNKRRN
101: KIQGDHEDEE EKNVLPNPAQ AAAASALAFS VGAIVPLLAA SFIRDYKVRI GAVVAAVTIA LMVFA
Best Arabidopsis Sequence Match ( AT3G43660.1 )
(BLAST)
001: MESNNNNLNL DMEKDQETTF DYSKRAQWLR AAVLGANDGL VSTASLMMGI GAVKQDVRIM LLTGFAGLVA GACSMAIGEF ISVYSQYDIE VAQMKRESGG
101: ETKKEKLPSP TQAAIASALA FTLGAIVPLL AAAFVKEYKV RIGVIVAAVT LALVMFGWLG AVLGKAPVVK SLVRVLIGGW LAMAITFGFT KLVGSHGL
Arabidopsis Description
Vacuolar iron transporter homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C0]
SUBAcon: [peroxisome,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.