Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- peroxisome 2
- mitochondrion 2
- plastid 1
- plasma membrane 1
- golgi 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g051180.1.1 | Tomato | extracellular | 66.96 | 92.12 |
| KRH35158 | Soybean | plasma membrane | 68.72 | 78.79 |
| VIT_18s0076g00320.t01 | Wine grape | cytosol, peroxisome, vacuole | 74.89 | 76.92 |
| KRG91640 | Soybean | cytosol, peroxisome, vacuole | 73.13 | 75.8 |
| KRH08706 | Soybean | cytosol, peroxisome, vacuole | 74.01 | 72.1 |
| KRH70313 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 72.69 | 69.04 |
| PGSC0003DMT400076566 | Potato | extracellular, plasma membrane, vacuole | 45.81 | 64.6 |
| PGSC0003DMT400032701 | Potato | plasma membrane | 59.91 | 63.85 |
| PGSC0003DMT400076567 | Potato | plasma membrane | 58.59 | 63.33 |
| PGSC0003DMT400076565 | Potato | plasma membrane | 59.47 | 62.79 |
| GSMUA_Achr9P29610_001 | Banana | cytosol, peroxisome, vacuole | 56.39 | 62.75 |
| PGSC0003DMT400076561 | Potato | cytosol, peroxisome, plasma membrane | 59.03 | 61.47 |
| PGSC0003DMT400076498 | Potato | plasma membrane | 58.15 | 60.83 |
| TraesCS2D01G588000.1 | Wheat | cytosol, plasma membrane, vacuole | 50.66 | 59.9 |
| Zm00001d026679_P001 | Maize | cytosol, peroxisome, vacuole | 54.19 | 59.42 |
| Os04t0686800-01 | Rice | cytosol, peroxisome, vacuole | 54.19 | 59.13 |
| TraesCS2B01G610400.1 | Wheat | cytosol, plasma membrane, vacuole | 53.3 | 58.74 |
| TraesCS2A01G434100.1 | Wheat | cytosol, plasma membrane, vacuole | 31.72 | 57.6 |
| Zm00001d002884_P001 | Maize | cytosol, plasma membrane, vacuole | 54.19 | 57.48 |
| TraesCS2D01G431900.1 | Wheat | cytosol, plasma membrane, vacuole | 51.54 | 55.71 |
| TraesCS2B01G455200.1 | Wheat | cytosol, plasma membrane, vacuole | 51.54 | 55.71 |
| TraesCS2A01G434000.1 | Wheat | cytosol, plasma membrane, vacuole | 51.54 | 55.71 |
| TraesCS2B01G455100.1 | Wheat | cytosol, plasma membrane, vacuole | 51.54 | 55.71 |
| TraesCS2B01G455000.1 | Wheat | cytosol, plasma membrane, vacuole | 44.49 | 55.49 |
| TraesCS2B01G455300.1 | Wheat | cytosol, plasma membrane, vacuole | 51.54 | 55.19 |
| TraesCS2A01G433900.1 | Wheat | cytosol, plasma membrane, vacuole | 50.66 | 54.76 |
| TraesCS2A01G434200.1 | Wheat | cytosol, plasma membrane, vacuole | 50.66 | 54.76 |
| EES11692 | Sorghum | cytosol, peroxisome, vacuole | 55.07 | 54.59 |
| TraesCS2D01G432000.1 | Wheat | cytosol, plasma membrane, vacuole | 50.66 | 54.25 |
| TraesCS2B01G454900.1 | Wheat | cytosol, plasma membrane, vacuole | 48.9 | 52.36 |
| TraesCS4A01G209600.1 | Wheat | plasma membrane | 43.17 | 49.25 |
| GSMUA_Achr10P... | Banana | plasma membrane | 55.51 | 48.09 |
| HORVU2Hr1G101180.2 | Barley | cytosol | 48.02 | 47.6 |
| PGSC0003DMT400076558 | Potato | cytosol, peroxisome, plasma membrane | 42.29 | 46.6 |
| TraesCS4D01G110600.1 | Wheat | cytosol, plasma membrane, vacuole | 44.49 | 45.7 |
| HORVU4Hr1G020210.1 | Barley | cytosol, peroxisome | 44.49 | 45.09 |
| Os11t0161900-00 | Rice | cytosol, nucleus, plasma membrane | 40.97 | 44.93 |
| OQU82931 | Sorghum | cytosol, peroxisome, plastid, vacuole | 46.7 | 44.73 |
| TraesCS4B01G112900.1 | Wheat | endoplasmic reticulum | 44.93 | 37.92 |
| PGSC0003DMT400024376 | Potato | cytosol, peroxisome, plasma membrane | 40.09 | 33.09 |
| PGSC0003DMT400024377 | Potato | cytosol, peroxisome, plasma membrane | 40.09 | 33.09 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400008929 | EnsemblPlantsGene:PGSC0003DMG400003477 | EntrezGene:102580357 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Ccc1_fam | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF30 | PFAM:PF01988 | PGSC:PGSC0003DMG400003477 | RefSeq:XP_006362825.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000296828D | UniProt:M0ZVA6 | MapMan:24.2.12.3 | : |
Description
Nodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400003477]
Coordinates
chr4:+:59225942..59226992
Molecular Weight (calculated)
24172.4 Da
IEP (calculated)
9.008
GRAVY (calculated)
0.188
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNQASNNT QQESKFTLSM NHDMEQQQVS LDHQQVEEKE FDYSKRSQWL RAAVLGANDG LVSTASLMMG IGAVKKDIKV MILTGFAGLV AGACSMAIGE
101: FVSVYSQLDI EVAQMKRDNK RRNKIEGADE DEKNVLPNPA QAAAASALAF SVGAIVPLLA ASFIRDYKLR IGAVVAAVTI ALMVFGWLGA VLGKAPAIKS
201: SARVLFGGWL AMAITYGLTK LIGSSGL
101: FVSVYSQLDI EVAQMKRDNK RRNKIEGADE DEKNVLPNPA QAAAASALAF SVGAIVPLLA ASFIRDYKLR IGAVVAAVTI ALMVFGWLGA VLGKAPAIKS
201: SARVLFGGWL AMAITYGLTK LIGSSGL
001: MESNNNNLNL DMEKDQETTF DYSKRAQWLR AAVLGANDGL VSTASLMMGI GAVKQDVRIM LLTGFAGLVA GACSMAIGEF ISVYSQYDIE VAQMKRESGG
101: ETKKEKLPSP TQAAIASALA FTLGAIVPLL AAAFVKEYKV RIGVIVAAVT LALVMFGWLG AVLGKAPVVK SLVRVLIGGW LAMAITFGFT KLVGSHGL
101: ETKKEKLPSP TQAAIASALA FTLGAIVPLL AAAFVKEYKV RIGVIVAAVT LALVMFGWLG AVLGKAPVVK SLVRVLIGGW LAMAITFGFT KLVGSHGL
Arabidopsis Description
Vacuolar iron transporter homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C0]
SUBAcon: [peroxisome,vacuole,cytosol]
SUBAcon: [peroxisome,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.