Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- extracellular 3
- plasma membrane 4
- golgi 3
- endoplasmic reticulum 2
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400022426 | |
| PGSC0003DMT400056956 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G25190.1 | PGSC0003DMT400022426 | AT4G26455.1 | 21798944 |
| AT3G25190.1 | PGSC0003DMT400056956 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g104800.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 90.68 | 71.22 |
| PGSC0003DMT400076567 | Potato | plasma membrane | 92.55 | 70.95 |
| PGSC0003DMT400032701 | Potato | plasma membrane | 93.17 | 70.42 |
| PGSC0003DMT400076565 | Potato | plasma membrane | 90.68 | 67.91 |
| PGSC0003DMT400076561 | Potato | cytosol, peroxisome, plasma membrane | 72.67 | 53.67 |
| KRH42214 | Soybean | extracellular | 54.66 | 53.33 |
| TraesCS2A01G434100.1 | Wheat | cytosol, plasma membrane, vacuole | 39.75 | 51.2 |
| VIT_12s0055g00860.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 68.32 | 49.33 |
| VIT_12s0055g00870.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 68.32 | 49.11 |
| GSMUA_Achr9P29610_001 | Banana | cytosol, peroxisome, vacuole | 59.63 | 47.06 |
| KRH42213 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 63.35 | 46.15 |
| TraesCS2D01G588000.1 | Wheat | cytosol, plasma membrane, vacuole | 54.66 | 45.83 |
| PGSC0003DMT400008929 | Potato | cytosol, peroxisome, vacuole | 64.6 | 45.81 |
| CDY15107 | Canola | cytosol, peroxisome, plasma membrane | 60.87 | 44.75 |
| KRH58338 | Soybean | cytosol, peroxisome, plasma membrane | 54.04 | 44.39 |
| Bra013226.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 60.25 | 44.29 |
| CDY52279 | Canola | cytosol, peroxisome, plasma membrane | 60.25 | 44.29 |
| AT3G25190.1 | Thale cress | cytosol, peroxisome, plastid | 60.25 | 44.29 |
| PGSC0003DMT400076498 | Potato | plasma membrane | 59.01 | 43.78 |
| KRH58337 | Soybean | plasma membrane | 62.11 | 43.67 |
| VIT_12s0055g00850.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 56.52 | 43.13 |
| KRH42212 | Soybean | plasma membrane | 61.49 | 43.04 |
| Os04t0686800-01 | Rice | cytosol, peroxisome, vacuole | 55.28 | 42.79 |
| TraesCS2B01G610400.1 | Wheat | cytosol, plasma membrane, vacuole | 54.66 | 42.72 |
| KRH28884 | Soybean | cytosol, peroxisome, vacuole | 59.63 | 41.74 |
| KRH76566 | Soybean | cytosol, peroxisome, vacuole | 58.39 | 40.34 |
| Zm00001d002884_P001 | Maize | cytosol, plasma membrane, vacuole | 52.17 | 39.25 |
| Zm00001d026679_P001 | Maize | cytosol, peroxisome, vacuole | 50.31 | 39.13 |
| KRH42215 | Soybean | cytosol, plastid, vacuole | 55.28 | 38.86 |
| KRH58339 | Soybean | cytosol, peroxisome, plasma membrane | 52.8 | 38.12 |
| TraesCS2B01G455300.1 | Wheat | cytosol, plasma membrane, vacuole | 49.69 | 37.74 |
| TraesCS2A01G434000.1 | Wheat | cytosol, plasma membrane, vacuole | 49.07 | 37.62 |
| TraesCS2D01G431900.1 | Wheat | cytosol, plasma membrane, vacuole | 49.07 | 37.62 |
| TraesCS2B01G455200.1 | Wheat | cytosol, plasma membrane, vacuole | 49.07 | 37.62 |
| TraesCS2B01G455100.1 | Wheat | cytosol, plasma membrane, vacuole | 49.07 | 37.62 |
| TraesCS2A01G433900.1 | Wheat | cytosol, plasma membrane, vacuole | 48.45 | 37.14 |
| TraesCS2A01G434200.1 | Wheat | cytosol, plasma membrane, vacuole | 48.45 | 37.14 |
| KRH58340 | Soybean | plasma membrane | 54.04 | 36.86 |
| TraesCS2D01G432000.1 | Wheat | cytosol, plasma membrane, vacuole | 48.45 | 36.79 |
| EES11692 | Sorghum | cytosol, peroxisome, vacuole | 52.17 | 36.68 |
| GSMUA_Achr10P... | Banana | plasma membrane | 58.39 | 35.88 |
| HORVU2Hr1G101180.2 | Barley | cytosol | 50.93 | 35.81 |
| TraesCS4A01G209600.1 | Wheat | plasma membrane | 43.48 | 35.18 |
| TraesCS2B01G454900.1 | Wheat | cytosol, plasma membrane, vacuole | 45.34 | 34.43 |
| TraesCS2B01G455000.1 | Wheat | cytosol, plasma membrane, vacuole | 38.51 | 34.07 |
| KRH58336 | Soybean | peroxisome, plasma membrane, vacuole | 37.89 | 33.89 |
| PGSC0003DMT400076558 | Potato | cytosol, peroxisome, plasma membrane | 42.86 | 33.5 |
| TraesCS4D01G110600.1 | Wheat | cytosol, plasma membrane, vacuole | 42.86 | 31.22 |
| Os11t0161900-00 | Rice | cytosol, nucleus, plasma membrane | 39.13 | 30.43 |
| OQU82931 | Sorghum | cytosol, peroxisome, plastid, vacuole | 43.48 | 29.54 |
| HORVU4Hr1G020210.1 | Barley | cytosol, peroxisome | 40.99 | 29.46 |
| KRH42211 | Soybean | cytosol, plasma membrane, vacuole | 34.16 | 26.19 |
| TraesCS4B01G112900.1 | Wheat | endoplasmic reticulum | 42.24 | 25.28 |
| PGSC0003DMT400024377 | Potato | cytosol, peroxisome, plasma membrane | 40.99 | 24.0 |
| PGSC0003DMT400024376 | Potato | cytosol, peroxisome, plasma membrane | 40.99 | 24.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400076566 | EnsemblPlantsGene:PGSC0003DMG400029769 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Ccc1_fam |
| PANTHER:PTHR31851 | PANTHER:PTHR31851:SF30 | PFAM:PF01988 | PGSC:PGSC0003DMG400029769 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000295FE9B | UniProt:M1CWZ3 | MapMan:24.2.12.3 | : | : | : |
Description
Nodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400029769]
Coordinates
chr1:+:81588102..81588667
Molecular Weight (calculated)
16666.6 Da
IEP (calculated)
8.776
GRAVY (calculated)
0.622
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVGAVQENV KTMIITGFAG LFAGACSMAI GEFVSVYSQL DIERAQMNRD KATGGQNREH EEGNKEQLPN PFQAAGASSI AFSLGAIVPI LAAAFIANHK
101: VRLAVIVAAV SLALVAFGVI GAFLGRSPIV KSCARVLIGG WMAMAITFGL TKLIGSTGLE I
101: VRLAVIVAAV SLALVAFGVI GAFLGRSPIV KSCARVLIGG WMAMAITFGL TKLIGSTGLE I
001: MESHNVSNSL NLDMEMDQEK AFDYSKRAQW LRAAVLGAND GLVSTASLMM GVGAVKQDVK VMILSGFAGL VAGACSMAIG EFVSVYSQYD IEVAQMKREN
101: GGQVEKEKLP SPMQAAAASA LAFSLGAIVP LMAAAFVKDY HVRIGAIVAA VTLALVMFGW LGAVLGKAPV FKSSARVLIG GWLAMAVTFG LTKLIGTHSL
101: GGQVEKEKLP SPMQAAAASA LAFSLGAIVP LMAAAFVKDY HVRIGAIVAA VTLALVMFGW LGAVLGKAPV FKSSARVLIG GWLAMAVTFG LTKLIGTHSL
Arabidopsis Description
Vacuolar iron transporter homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPU9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.