Factsheet for PGSC0003DMT400076498

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
golgi 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104780.2.1	Tomato	nucleus, peroxisome, vacuole	92.63	94.81
AT3G43660.1	Thale cress	cytosol, peroxisome, vacuole	64.98	71.21
CDX88318	Canola	cytosol, peroxisome, vacuole	61.29	68.56
CDX87566	Canola	cytosol, peroxisome, vacuole	61.29	68.56
Bra015718.1-P	Field mustard	cytosol, peroxisome, vacuole	61.29	68.56
Bra008277.1-P	Field mustard	cytosol, peroxisome, vacuole	60.83	68.04
CDY20388	Canola	cytosol, peroxisome, vacuole	60.83	68.04
CDY45946	Canola	cytosol, peroxisome, vacuole	60.83	68.04
Bra012271.1-P	Field mustard	cytosol, peroxisome, vacuole	62.67	68.0
AT3G43630.1	Thale cress	cytosol, peroxisome, plasma membrane	62.67	68.0
AT1G21140.1	Thale cress	cytosol, peroxisome, plasma membrane	62.67	68.0
CDY71883	Canola	cytosol, peroxisome, vacuole	62.67	68.0
Bra025879.1-P	Field mustard	cytosol, peroxisome, vacuole	62.67	67.66
CDY04601	Canola	cytosol, peroxisome, vacuole	62.67	67.66
CDY29473	Canola	cytosol, peroxisome, vacuole	62.67	67.66
CDY33672	Canola	cytosol, peroxisome, vacuole	59.91	66.67
AT1G76800.1	Thale cress	cytosol, peroxisome, plasma membrane	59.91	66.33
CDX96601	Canola	cytosol, peroxisome, vacuole	60.37	65.5
KRH43941	Soybean	cytosol, peroxisome, vacuole	64.98	64.98
CDY01332	Canola	cytosol, peroxisome, vacuole	62.67	64.76
PGSC0003DMT400076567	Potato	plasma membrane	57.14	59.05
PGSC0003DMT400076566	Potato	extracellular, plasma membrane, vacuole	43.78	59.01
PGSC0003DMT400008929	Potato	cytosol, peroxisome, vacuole	60.83	58.15
PGSC0003DMT400032701	Potato	plasma membrane	56.68	57.75
PGSC0003DMT400076565	Potato	plasma membrane	56.68	57.21
KRH10486	Soybean	plasma membrane	47.93	56.22
PGSC0003DMT400076561	Potato	cytosol, peroxisome, plasma membrane	55.76	55.5
GSMUA_Achr9P29610_001	Banana	cytosol, peroxisome, vacuole	52.07	55.39
TraesCS2D01G588000.1	Wheat	cytosol, plasma membrane, vacuole	47.0	53.12
TraesCS2B01G610400.1	Wheat	cytosol, plasma membrane, vacuole	48.85	51.46
Os04t0686800-01	Rice	cytosol, peroxisome, vacuole	49.31	51.44
Zm00001d026679_P001	Maize	cytosol, peroxisome, vacuole	48.85	51.21
TraesCS2A01G434100.1	Wheat	cytosol, plasma membrane, vacuole	28.57	49.6
Zm00001d002884_P001	Maize	cytosol, plasma membrane, vacuole	47.47	48.13
TraesCS2A01G434000.1	Wheat	cytosol, plasma membrane, vacuole	46.08	47.62
TraesCS2D01G431900.1	Wheat	cytosol, plasma membrane, vacuole	46.08	47.62
TraesCS2B01G455200.1	Wheat	cytosol, plasma membrane, vacuole	46.08	47.62
TraesCS2B01G455100.1	Wheat	cytosol, plasma membrane, vacuole	46.08	47.62
TraesCS2B01G455300.1	Wheat	cytosol, plasma membrane, vacuole	46.08	47.17
TraesCS2B01G455000.1	Wheat	cytosol, plasma membrane, vacuole	39.17	46.7
TraesCS2A01G434200.1	Wheat	cytosol, plasma membrane, vacuole	45.16	46.67
TraesCS2A01G433900.1	Wheat	cytosol, plasma membrane, vacuole	45.16	46.67
TraesCS4A01G209600.1	Wheat	plasma membrane	42.4	46.23
TraesCS2D01G432000.1	Wheat	cytosol, plasma membrane, vacuole	45.16	46.23
EES11692	Sorghum	cytosol, peroxisome, vacuole	47.47	44.98
GSMUA_Achr10P...	Banana	plasma membrane	53.0	43.89
TraesCS2B01G454900.1	Wheat	cytosol, plasma membrane, vacuole	42.86	43.87
TraesCS4D01G110600.1	Wheat	cytosol, plasma membrane, vacuole	43.78	42.99
HORVU2Hr1G101180.2	Barley	cytosol	44.7	42.36
Os11t0161900-00	Rice	cytosol, nucleus, plasma membrane	40.09	42.03
HORVU4Hr1G020210.1	Barley	cytosol, peroxisome	43.32	41.96
PGSC0003DMT400076558	Potato	cytosol, peroxisome, plasma membrane	36.87	38.84
OQU82931	Sorghum	cytosol, peroxisome, plastid, vacuole	42.4	38.82
TraesCS4B01G112900.1	Wheat	endoplasmic reticulum	44.24	35.69
PGSC0003DMT400024376	Potato	cytosol, peroxisome, plasma membrane	42.4	33.45
PGSC0003DMT400024377	Potato	cytosol, peroxisome, plasma membrane	42.4	33.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400076498	EnsemblPlantsGene:PGSC0003DMG400029744	EntrezGene:102592810	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Ccc1_fam	PANTHER:PTHR31851	PANTHER:PTHR31851:SF6	PFAM:PF01988	PGSC:PGSC0003DMG400029744	RefSeq:XP_006351817.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI00029528D9	UniProt:M1CWV4	MapMan:24.2.12.3	:

Description

Nodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400029744]

Coordinates

chr1:-:81566672..81567534

Molecular Weight (calculated)

22989.3 Da

IEP (calculated)

7.596

GRAVY (calculated)

0.448

Length

217 amino acids

Sequence
(BLAST)

001: MASITNIQEL SKDHDIEKQS NNMEVEQNLE VLIVDYSKRA QWLRAAVLGA NDGLLSTSSL MMGIGAIHQD SKSMILTGIA GLVAGACSMA IGEFVSVYSQ
101: YDIEMSQIKR ENAIELFEEK KKKLPSPVQA AGASAFAFAI GAIVPLLGAA FVKDYHVRLG VVVGVVSLAL LGFGGLSAYL GKAPFVKSSL RVLIGGWLAM
201: GITFGFTKLV GVTGLYG

Best Arabidopsis Sequence Match ( AT3G43660.1 )
(BLAST)

001: MESNNNNLNL DMEKDQETTF DYSKRAQWLR AAVLGANDGL VSTASLMMGI GAVKQDVRIM LLTGFAGLVA GACSMAIGEF ISVYSQYDIE VAQMKRESGG
101: ETKKEKLPSP TQAAIASALA FTLGAIVPLL AAAFVKEYKV RIGVIVAAVT LALVMFGWLG AVLGKAPVVK SLVRVLIGGW LAMAITFGFT KLVGSHGL

Arabidopsis Description

Vacuolar iron transporter homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C0]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.