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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • plastid 1
  • mitochondrion 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plasma membrane, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400024376 Potato cytosol, peroxisome, plasma membrane 100.0 100.0
Solyc02g068260.1.1 Tomato cytosol, peroxisome, plasma membrane 92.0 90.04
PGSC0003DMT400076567 Potato plasma membrane 33.45 43.81
VIT_04s0044g01960.t01 Wine grape cytosol, peroxisome, plasma membrane 46.91 43.0
PGSC0003DMT400076498 Potato plasma membrane 33.45 42.4
PGSC0003DMT400032701 Potato plasma membrane 32.36 41.78
PGSC0003DMT400076566 Potato extracellular, plasma membrane, vacuole 24.0 40.99
PGSC0003DMT400076561 Potato cytosol, peroxisome, plasma membrane 32.36 40.83
PGSC0003DMT400076565 Potato plasma membrane 31.64 40.47
PGSC0003DMT400008929 Potato cytosol, peroxisome, vacuole 33.09 40.09
PGSC0003DMT400076558 Potato cytosol, peroxisome, plasma membrane 24.36 32.52
Protein Annotations
EnsemblPlants:PGSC0003DMT400024377EnsemblPlantsGene:PGSC0003DMG401009425EntrezGene:102581952EntrezGene:107058477GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:Ccc1_famPANTHER:PTHR31851PANTHER:PTHR31851:SF12PFAM:PF01988PGSC:PGSC0003DMG401009425
RefSeq:XP_015159723.1SEG:segTMHMM:TMhelixUniParc:UPI0002950F73UniProt:M1AK09MapMan:24.2.12.3
Description
Tonoplast intrinsic protein, alpha (Alpha-TIP) [Source:PGSC_GENE;Acc:PGSC0003DMG401009425]
Coordinates
chr2:-:27010818..27015458
Molecular Weight (calculated)
29188.6 Da
IEP (calculated)
8.816
GRAVY (calculated)
0.127
Length
275 amino acids
Sequence
(BLAST)
001: MDSPKSIEAC GKKDSHATAQ EEKTIEKLAR AQWLRAAILG ANDGLLSTTS LMLGVGAAKD QDQRSMVLSG IAGALAGACS MAVGEFVSVS TQRDIAKSIA
101: YELKGSSSTN IAETKQGEVP HDMVFHSKLA TSTQGGKLLY ESPVRIQSNS LTPSRSPLTK VMEFDARRTM MEESKQDNAI KLEPLPSPLK SAAASSLAFL
201: FGAFVPMMPA LLVSENRIRI FLMVLVASLA LCLFGGIGAY LGGSSVKISA MRVLLGGWIS MALSYGLLKP FAHDD
Best Arabidopsis Sequence Match ( AT1G21140.1 )
(BLAST)
001: MESHNVSNSL NLDMEMDQEK AFDYSKRAQW LRAAVLGAND GLVSTASLMM GVGAVKQDVK VMILSGFAGL VAGACSMAIG EFVSVYSQYD IEVAQMKREN
101: GGQVEKEKLP SPMQAAAASA LAFSLGAIVP LMAAAFVKDY HVRIGAIVAA VTLALVMFGW LGAVLGKAPV FKSSARVLIG GWLAMAVTFG LTKLIGTHSL
Arabidopsis Description
Vacuolar iron transporter homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPU9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.