Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400022426 | |
| PGSC0003DMT400056956 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G25190.1 | PGSC0003DMT400022426 | AT4G26455.1 | 21798944 |
| AT3G25190.1 | PGSC0003DMT400056956 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076566 | Potato | extracellular, plasma membrane, vacuole | 70.95 | 92.55 |
| PGSC0003DMT400032701 | Potato | plasma membrane | 92.86 | 91.55 |
| Solyc01g105260.1.1 | Tomato | extracellular, vacuole | 66.67 | 88.05 |
| PGSC0003DMT400076565 | Potato | plasma membrane | 88.1 | 86.05 |
| PGSC0003DMT400076561 | Potato | cytosol, peroxisome, plasma membrane | 73.81 | 71.1 |
| VIT_12s0055g00870.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 68.57 | 64.29 |
| VIT_12s0055g00860.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 64.76 | 60.99 |
| KRH42213 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 63.81 | 60.63 |
| KRH58338 | Soybean | cytosol, peroxisome, plasma membrane | 55.71 | 59.69 |
| PGSC0003DMT400008929 | Potato | cytosol, peroxisome, vacuole | 63.33 | 58.59 |
| KRH42212 | Soybean | plasma membrane | 63.81 | 58.26 |
| GSMUA_Achr9P29610_001 | Banana | cytosol, peroxisome, vacuole | 56.19 | 57.84 |
| KRH28884 | Soybean | cytosol, peroxisome, vacuole | 63.33 | 57.83 |
| KRH58337 | Soybean | plasma membrane | 62.86 | 57.64 |
| PGSC0003DMT400076498 | Potato | plasma membrane | 59.05 | 57.14 |
| VIT_12s0055g00850.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 57.14 | 56.87 |
| CDY15107 | Canola | cytosol, peroxisome, plasma membrane | 58.57 | 56.16 |
| KRH76566 | Soybean | cytosol, peroxisome, vacuole | 61.9 | 55.79 |
| Bra013226.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 57.62 | 55.25 |
| CDY52279 | Canola | cytosol, peroxisome, plasma membrane | 57.62 | 55.25 |
| TraesCS2D01G588000.1 | Wheat | cytosol, plasma membrane, vacuole | 50.48 | 55.21 |
| Os04t0686800-01 | Rice | cytosol, peroxisome, vacuole | 54.29 | 54.81 |
| AT3G25190.1 | Thale cress | cytosol, peroxisome, plastid | 57.14 | 54.79 |
| KRH42214 | Soybean | extracellular | 42.38 | 53.94 |
| TraesCS2B01G610400.1 | Wheat | cytosol, plasma membrane, vacuole | 51.9 | 52.91 |
| Zm00001d026679_P001 | Maize | cytosol, peroxisome, vacuole | 50.48 | 51.21 |
| KRH58339 | Soybean | cytosol, peroxisome, plasma membrane | 54.29 | 51.12 |
| KRH42215 | Soybean | cytosol, plastid, vacuole | 55.24 | 50.66 |
| KRH58336 | Soybean | peroxisome, plasma membrane, vacuole | 43.33 | 50.56 |
| Zm00001d002884_P001 | Maize | cytosol, plasma membrane, vacuole | 51.43 | 50.47 |
| TraesCS2A01G434100.1 | Wheat | cytosol, plasma membrane, vacuole | 30.0 | 50.4 |
| KRH58340 | Soybean | plasma membrane | 55.71 | 49.58 |
| TraesCS2D01G431900.1 | Wheat | cytosol, plasma membrane, vacuole | 49.52 | 49.52 |
| TraesCS2B01G455300.1 | Wheat | cytosol, plasma membrane, vacuole | 49.52 | 49.06 |
| TraesCS2B01G455200.1 | Wheat | cytosol, plasma membrane, vacuole | 49.05 | 49.05 |
| TraesCS2B01G455100.1 | Wheat | cytosol, plasma membrane, vacuole | 49.05 | 49.05 |
| TraesCS2A01G434000.1 | Wheat | cytosol, plasma membrane, vacuole | 49.05 | 49.05 |
| PGSC0003DMT400076558 | Potato | cytosol, peroxisome, plasma membrane | 48.1 | 49.03 |
| TraesCS2D01G432000.1 | Wheat | cytosol, plasma membrane, vacuole | 49.05 | 48.58 |
| TraesCS2A01G434200.1 | Wheat | cytosol, plasma membrane, vacuole | 48.57 | 48.57 |
| TraesCS2A01G433900.1 | Wheat | cytosol, plasma membrane, vacuole | 48.57 | 48.57 |
| TraesCS2B01G455000.1 | Wheat | cytosol, plasma membrane, vacuole | 40.95 | 47.25 |
| EES11692 | Sorghum | cytosol, peroxisome, vacuole | 50.95 | 46.72 |
| GSMUA_Achr10P... | Banana | plasma membrane | 57.14 | 45.8 |
| TraesCS2B01G454900.1 | Wheat | cytosol, plasma membrane, vacuole | 46.19 | 45.75 |
| TraesCS4A01G209600.1 | Wheat | plasma membrane | 42.86 | 45.23 |
| HORVU2Hr1G101180.2 | Barley | cytosol | 48.57 | 44.54 |
| Os11t0161900-00 | Rice | cytosol, nucleus, plasma membrane | 41.9 | 42.51 |
| TraesCS4D01G110600.1 | Wheat | cytosol, plasma membrane, vacuole | 43.33 | 41.18 |
| HORVU4Hr1G020210.1 | Barley | cytosol, peroxisome | 43.81 | 41.07 |
| OQU82931 | Sorghum | cytosol, peroxisome, plastid, vacuole | 43.81 | 38.82 |
| KRH42211 | Soybean | cytosol, plasma membrane, vacuole | 38.1 | 38.1 |
| TraesCS4B01G112900.1 | Wheat | endoplasmic reticulum | 43.81 | 34.2 |
| PGSC0003DMT400024376 | Potato | cytosol, peroxisome, plasma membrane | 43.81 | 33.45 |
| PGSC0003DMT400024377 | Potato | cytosol, peroxisome, plasma membrane | 43.81 | 33.45 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400076567 | EnsemblPlantsGene:PGSC0003DMG400029770 | EntrezGene:102581765 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Ccc1_fam | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF30 | PFAM:PF01988 | PGSC:PGSC0003DMG400029770 | RefSeq:XP_006351865.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI00029585D3 | UniProt:M1CWZ4 | MapMan:24.2.12.3 | : |
Description
Nodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400029770]
Coordinates
chr1:+:81585234..81586203
Molecular Weight (calculated)
22274.3 Da
IEP (calculated)
6.261
GRAVY (calculated)
0.372
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAQNHLQIT IPKENQIPEE DFDYSQRAQW LRAAVLGAND GLVSIASLMM GVGAVQENVK TMMLTGFAGL FAGACSMAIG EFVSVYSQLD IERAQIKRDK
101: ATRGQNREHE EGNKEQLPNP FQAAVASSIA FSLGAIVPIL AAALIENHEV RLAVIVAAVS LALLAFGGIG AFLGRSPMVK SCARVLIGGW MAMAITFGLT
201: KLIGSTGLEI
101: ATRGQNREHE EGNKEQLPNP FQAAVASSIA FSLGAIVPIL AAALIENHEV RLAVIVAAVS LALLAFGGIG AFLGRSPMVK SCARVLIGGW MAMAITFGLT
201: KLIGSTGLEI
001: MESNNNNLNL DMEKDQETTF DYSKRAQWLR AAVLGANDGL VSTASLMMGI GAVKQDVRIM LLTGFAGLVA GACSMAIGEF ISVYSQYDIE VAQMKRESGG
101: ETKKEKLPSP TQAAIASALA FTLGAIVPLL AAAFVKEYKV RIGVIVAAVT LALVMFGWLG AVLGKAPVVK SLVRVLIGGW LAMAITFGFT KLVGSHGL
101: ETKKEKLPSP TQAAIASALA FTLGAIVPLL AAAFVKEYKV RIGVIVAAVT LALVMFGWLG AVLGKAPVVK SLVRVLIGGW LAMAITFGFT KLVGSHGL
Arabidopsis Description
Vacuolar iron transporter homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C0]
SUBAcon: [peroxisome,vacuole,cytosol]
SUBAcon: [peroxisome,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.