Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_19s0015g01790.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G25190.1 | VIT_19s0015g01790.t01 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0055g00860.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 75.45 | 75.78 |
| Solyc01g104800.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 63.84 | 69.76 |
| PGSC0003DMT400076567 | Potato | plasma membrane | 64.29 | 68.57 |
| VIT_18s0076g00320.t01 | Wine grape | cytosol, peroxisome, vacuole | 67.41 | 68.33 |
| PGSC0003DMT400076566 | Potato | extracellular, plasma membrane, vacuole | 49.11 | 68.32 |
| PGSC0003DMT400032701 | Potato | plasma membrane | 64.73 | 68.08 |
| Solyc01g104810.2.1 | Tomato | plasma membrane | 65.18 | 67.91 |
| PGSC0003DMT400076565 | Potato | plasma membrane | 64.29 | 66.98 |
| KRH42213 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 66.07 | 66.97 |
| KRH58338 | Soybean | cytosol, peroxisome, plasma membrane | 58.48 | 66.84 |
| VIT_12s0055g00850.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 62.05 | 65.88 |
| KRH42212 | Soybean | plasma membrane | 66.52 | 64.78 |
| Solyc01g105260.1.1 | Tomato | extracellular, vacuole | 45.98 | 64.78 |
| KRH58337 | Soybean | plasma membrane | 66.07 | 64.63 |
| Solyc01g104820.2.1 | Tomato | plasma membrane | 62.05 | 64.06 |
| PGSC0003DMT400076561 | Potato | cytosol, peroxisome, plasma membrane | 62.05 | 63.76 |
| GSMUA_Achr9P29610_001 | Banana | cytosol, peroxisome, vacuole | 57.59 | 63.24 |
| KRH28884 | Soybean | cytosol, peroxisome, vacuole | 64.73 | 63.04 |
| KRH76566 | Soybean | cytosol, peroxisome, vacuole | 63.39 | 60.94 |
| TraesCS2D01G588000.1 | Wheat | cytosol, plasma membrane, vacuole | 50.45 | 58.85 |
| KRH42214 | Soybean | extracellular | 42.41 | 57.58 |
| CDY15107 | Canola | cytosol, peroxisome, plasma membrane | 55.36 | 56.62 |
| TraesCS2B01G610400.1 | Wheat | cytosol, plasma membrane, vacuole | 51.79 | 56.31 |
| Os04t0686800-01 | Rice | cytosol, peroxisome, vacuole | 52.23 | 56.25 |
| Bra013226.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 54.91 | 56.16 |
| AT3G25190.1 | Thale cress | cytosol, peroxisome, plastid | 54.91 | 56.16 |
| CDY52279 | Canola | cytosol, peroxisome, plasma membrane | 54.91 | 56.16 |
| TraesCS2A01G434100.1 | Wheat | cytosol, plasma membrane, vacuole | 31.25 | 56.0 |
| Zm00001d026679_P001 | Maize | cytosol, peroxisome, vacuole | 50.89 | 55.07 |
| KRH58339 | Soybean | cytosol, peroxisome, plasma membrane | 54.02 | 54.26 |
| Zm00001d002884_P001 | Maize | cytosol, plasma membrane, vacuole | 51.79 | 54.21 |
| KRH42215 | Soybean | cytosol, plastid, vacuole | 54.91 | 53.71 |
| TraesCS2B01G455100.1 | Wheat | cytosol, plasma membrane, vacuole | 49.55 | 52.86 |
| TraesCS2D01G431900.1 | Wheat | cytosol, plasma membrane, vacuole | 49.55 | 52.86 |
| TraesCS2B01G455200.1 | Wheat | cytosol, plasma membrane, vacuole | 49.55 | 52.86 |
| TraesCS2A01G434000.1 | Wheat | cytosol, plasma membrane, vacuole | 49.55 | 52.86 |
| TraesCS4A01G209600.1 | Wheat | plasma membrane | 46.43 | 52.26 |
| KRH58340 | Soybean | plasma membrane | 54.91 | 52.12 |
| EES11692 | Sorghum | cytosol, peroxisome, vacuole | 53.12 | 51.97 |
| TraesCS2A01G433900.1 | Wheat | cytosol, plasma membrane, vacuole | 48.66 | 51.9 |
| TraesCS2A01G434200.1 | Wheat | cytosol, plasma membrane, vacuole | 48.66 | 51.9 |
| TraesCS2B01G455300.1 | Wheat | cytosol, plasma membrane, vacuole | 49.11 | 51.89 |
| KRH58336 | Soybean | peroxisome, plasma membrane, vacuole | 41.52 | 51.67 |
| TraesCS2D01G432000.1 | Wheat | cytosol, plasma membrane, vacuole | 48.66 | 51.42 |
| TraesCS2B01G455000.1 | Wheat | cytosol, plasma membrane, vacuole | 40.62 | 50.0 |
| TraesCS2B01G454900.1 | Wheat | cytosol, plasma membrane, vacuole | 45.09 | 47.64 |
| HORVU2Hr1G101180.2 | Barley | cytosol | 48.66 | 47.6 |
| TraesCS4D01G110600.1 | Wheat | cytosol, plasma membrane, vacuole | 46.88 | 47.51 |
| Os11t0161900-00 | Rice | cytosol, nucleus, plasma membrane | 43.75 | 47.34 |
| GSMUA_Achr10P... | Banana | plasma membrane | 55.36 | 47.33 |
| HORVU4Hr1G020210.1 | Barley | cytosol, peroxisome | 46.43 | 46.43 |
| PGSC0003DMT400076558 | Potato | cytosol, peroxisome, plasma membrane | 42.41 | 46.12 |
| Solyc01g104830.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 40.62 | 44.61 |
| OQU82931 | Sorghum | cytosol, peroxisome, plastid, vacuole | 45.54 | 43.04 |
| KRH42211 | Soybean | cytosol, plasma membrane, vacuole | 38.84 | 41.43 |
| TraesCS4B01G112900.1 | Wheat | endoplasmic reticulum | 47.32 | 39.41 |
| VIT_04s0044g01960.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 42.41 | 31.67 |
Protein Annotations
| EntrezGene:100252125 | wikigene:100252125 | MapMan:24.2.12.3 | EMBL:AM452675 | ProteinID:CAN65436 | ProteinID:CAN65436.1 |
| ProteinID:CCB46159 | ProteinID:CCB46159.1 | InterPro:Ccc1_fam | UniProt:F6H1U0 | EMBL:FN595228 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005381 | GO:GO:0005384 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0006880 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019725 |
| GO:GO:0030026 | GO:GO:0034755 | GO:GO:0071281 | GO:GO:0071421 | EntrezGene:LOC100252125 | wikigene:LOC100252125 |
| PFAM:PF01988 | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF30 | TMHMM:TMhelix | UniParc:UPI000198464D | ArrayExpress:VIT_12s0055g00870 |
| EnsemblPlantsGene:VIT_12s0055g00870 | EnsemblPlants:VIT_12s0055g00870.t01 | RefSeq:XP_002268564 | RefSeq:XP_002268564.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr12:-:14218492..14219179
Molecular Weight (calculated)
23686.9 Da
IEP (calculated)
6.627
GRAVY (calculated)
0.248
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLELHGQQ SLNHVEISIH GNHSLPHEHC QEGEAEDFDY SKRGQWLRAA TLGANDGLVS IASLMMGVGA VKEDITAMIL AGFAGLVAGA CSMAIGEFVS
101: VYTQLDIELA QMKRDKRRRD STENEEKTEN EKLPNPFQAG IASALSFALG AMIPLLAAAF IREHKVRLGV VVAASSLALL AFGGLGAVLG RTPVGRSCAR
201: VLVGGWMAMA ITFGLTRLIG ATGL
101: VYTQLDIELA QMKRDKRRRD STENEEKTEN EKLPNPFQAG IASALSFALG AMIPLLAAAF IREHKVRLGV VVAASSLALL AFGGLGAVLG RTPVGRSCAR
201: VLVGGWMAMA ITFGLTRLIG ATGL
001: MESNNNNLNL DMEKDQETTF DYSKRAQWLR AAVLGANDGL VSTASLMMGI GAVKQDVRIM LLTGFAGLVA GACSMAIGEF ISVYSQYDIE VAQMKRESGG
101: ETKKEKLPSP TQAAIASALA FTLGAIVPLL AAAFVKEYKV RIGVIVAAVT LALVMFGWLG AVLGKAPVVK SLVRVLIGGW LAMAITFGFT KLVGSHGL
101: ETKKEKLPSP TQAAIASALA FTLGAIVPLL AAAFVKEYKV RIGVIVAAVT LALVMFGWLG AVLGKAPVVK SLVRVLIGGW LAMAITFGFT KLVGSHGL
Arabidopsis Description
Vacuolar iron transporter homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C0]
SUBAcon: [cytosol,peroxisome,vacuole]
SUBAcon: [cytosol,peroxisome,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.