Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400022426 | |
| PGSC0003DMT400056956 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G25190.1 | PGSC0003DMT400022426 | AT4G26455.1 | 21798944 |
| AT3G25190.1 | PGSC0003DMT400056956 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g104820.2.1 | Tomato | plasma membrane | 96.33 | 96.77 |
| PGSC0003DMT400076567 | Potato | plasma membrane | 71.1 | 73.81 |
| PGSC0003DMT400032701 | Potato | plasma membrane | 72.02 | 73.71 |
| PGSC0003DMT400076565 | Potato | plasma membrane | 72.02 | 73.02 |
| PGSC0003DMT400076566 | Potato | extracellular, plasma membrane, vacuole | 53.67 | 72.67 |
| KRH42213 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 64.68 | 63.8 |
| VIT_12s0055g00870.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 63.76 | 62.05 |
| KRH42212 | Soybean | plasma membrane | 65.14 | 61.74 |
| KRH58338 | Soybean | cytosol, peroxisome, plasma membrane | 55.5 | 61.73 |
| KRH58337 | Soybean | plasma membrane | 64.68 | 61.57 |
| VIT_12s0055g00860.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 61.93 | 60.54 |
| GSMUA_Achr9P29610_001 | Banana | cytosol, peroxisome, vacuole | 56.42 | 60.29 |
| PGSC0003DMT400008929 | Potato | cytosol, peroxisome, vacuole | 61.47 | 59.03 |
| AT3G25190.1 | Thale cress | cytosol, peroxisome, plastid | 59.17 | 58.9 |
| CDY15107 | Canola | cytosol, peroxisome, plasma membrane | 57.8 | 57.53 |
| Bra013226.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 57.34 | 57.08 |
| CDY52279 | Canola | cytosol, peroxisome, plasma membrane | 57.34 | 57.08 |
| KRH28884 | Soybean | cytosol, peroxisome, vacuole | 59.63 | 56.52 |
| TraesCS2D01G588000.1 | Wheat | cytosol, plasma membrane, vacuole | 49.54 | 56.25 |
| PGSC0003DMT400076498 | Potato | plasma membrane | 55.5 | 55.76 |
| VIT_12s0055g00850.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 53.21 | 54.98 |
| Os04t0686800-01 | Rice | cytosol, peroxisome, vacuole | 52.29 | 54.81 |
| KRH42214 | Soybean | extracellular | 41.28 | 54.55 |
| KRH76566 | Soybean | cytosol, peroxisome, vacuole | 57.8 | 54.08 |
| TraesCS2B01G610400.1 | Wheat | cytosol, plasma membrane, vacuole | 50.92 | 53.88 |
| Zm00001d002884_P001 | Maize | cytosol, plasma membrane, vacuole | 52.29 | 53.27 |
| Zm00001d026679_P001 | Maize | cytosol, peroxisome, vacuole | 50.46 | 53.14 |
| KRH58339 | Soybean | cytosol, peroxisome, plasma membrane | 53.21 | 52.02 |
| KRH42215 | Soybean | cytosol, plastid, vacuole | 54.13 | 51.53 |
| PGSC0003DMT400076558 | Potato | cytosol, peroxisome, plasma membrane | 48.62 | 51.46 |
| TraesCS2A01G434100.1 | Wheat | cytosol, plasma membrane, vacuole | 29.36 | 51.2 |
| TraesCS2D01G431900.1 | Wheat | cytosol, plasma membrane, vacuole | 48.62 | 50.48 |
| TraesCS2A01G434000.1 | Wheat | cytosol, plasma membrane, vacuole | 48.17 | 50.0 |
| TraesCS2B01G455100.1 | Wheat | cytosol, plasma membrane, vacuole | 48.17 | 50.0 |
| TraesCS2B01G455200.1 | Wheat | cytosol, plasma membrane, vacuole | 48.17 | 50.0 |
| TraesCS2B01G455300.1 | Wheat | cytosol, plasma membrane, vacuole | 48.17 | 49.53 |
| KRH58340 | Soybean | plasma membrane | 53.21 | 49.15 |
| TraesCS2A01G433900.1 | Wheat | cytosol, plasma membrane, vacuole | 47.25 | 49.05 |
| TraesCS2A01G434200.1 | Wheat | cytosol, plasma membrane, vacuole | 47.25 | 49.05 |
| TraesCS2B01G455000.1 | Wheat | cytosol, plasma membrane, vacuole | 40.83 | 48.9 |
| TraesCS2D01G432000.1 | Wheat | cytosol, plasma membrane, vacuole | 46.79 | 48.11 |
| EES11692 | Sorghum | cytosol, peroxisome, vacuole | 50.46 | 48.03 |
| KRH58336 | Soybean | peroxisome, plasma membrane, vacuole | 38.99 | 47.22 |
| TraesCS2B01G454900.1 | Wheat | cytosol, plasma membrane, vacuole | 45.41 | 46.7 |
| GSMUA_Achr10P... | Banana | plasma membrane | 55.96 | 46.56 |
| TraesCS4A01G209600.1 | Wheat | plasma membrane | 41.74 | 45.73 |
| HORVU2Hr1G101180.2 | Barley | cytosol | 46.79 | 44.54 |
| TraesCS4D01G110600.1 | Wheat | cytosol, plasma membrane, vacuole | 44.04 | 43.44 |
| HORVU4Hr1G020210.1 | Barley | cytosol, peroxisome | 44.5 | 43.3 |
| Os11t0161900-00 | Rice | cytosol, nucleus, plasma membrane | 39.45 | 41.55 |
| OQU82931 | Sorghum | cytosol, peroxisome, plastid, vacuole | 44.04 | 40.51 |
| KRH42211 | Soybean | cytosol, plasma membrane, vacuole | 36.7 | 38.1 |
| TraesCS4B01G112900.1 | Wheat | endoplasmic reticulum | 44.5 | 36.06 |
| PGSC0003DMT400024377 | Potato | cytosol, peroxisome, plasma membrane | 40.83 | 32.36 |
| PGSC0003DMT400024376 | Potato | cytosol, peroxisome, plasma membrane | 40.83 | 32.36 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400076561 | EnsemblPlantsGene:PGSC0003DMG400029767 | EntrezGene:102580762 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Ccc1_fam | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF30 | PFAM:PF01988 | PGSC:PGSC0003DMG400029767 | RefSeq:XP_006351862.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000296E031 | UniProt:M1CWZ1 | MapMan:24.2.12.3 | : |
Description
Nodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400029767]
Coordinates
chr1:+:81593804..81594460
Molecular Weight (calculated)
23047.1 Da
IEP (calculated)
6.264
GRAVY (calculated)
0.292
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQNHVQLT VIKENDNQNR NQVPEEDSDY FQRAQWLRAA TLGATDGLVT TASLMMGVGA VKKDVDAMIL IGFAALFAGA CSMAIGEFVS VYSQLDIELA
101: QIKRETKTRG QNHEQQEEED KKEGLPNPFL AAVASAVAFS LGGIIPILAA GFISNHKVRM GVVVAAVSLA LFVFGGVGAV LGKSPAVRSC ARVLIGGWMA
201: MGITFGLTKL IGSAGMEM
101: QIKRETKTRG QNHEQQEEED KKEGLPNPFL AAVASAVAFS LGGIIPILAA GFISNHKVRM GVVVAAVSLA LFVFGGVGAV LGKSPAVRSC ARVLIGGWMA
201: MGITFGLTKL IGSAGMEM
001: MTSNVQLSET NSPRNQKTRP RAEKEEVDYM QRAQWLRAAL LGANDGLVTV ASLMMGVGSI KEDVKAMLLV GFAGLVAGAC SMAIGEFVSV CTQRDIETAQ
101: MKRAIEHKTS LSAIDEQEEE EKKERLPNPG QAAIASALAF SVGAAMPLLG AVFIENHKVR MVVVAVVATI ALVVFGVTGA VLGKTSVVKS SVRVVIGGWM
201: AMALTFGLTK FIGSAAMQI
101: MKRAIEHKTS LSAIDEQEEE EKKERLPNPG QAAIASALAF SVGAAMPLLG AVFIENHKVR MVVVAVVATI ALVVFGVTGA VLGKTSVVKS SVRVVIGGWM
201: AMALTFGLTK FIGSAAMQI
Arabidopsis Description
Vacuolar iron transporter homolog 2.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSF6]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.