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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, vacuole, cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 1
  • mitochondrion 1
  • vacuole 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plastid, vacuole
Any Predictor:cytosol, nucleus, peroxisome, plastid, vacuole
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:vacuole
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
EER87676
EER96942
EES14314
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G25190.1 EER87676 AT1G01010.1 21798944
AT3G25190.1 EER96942 AT4G26455.1 21798944
AT3G25190.1 EES14314 AT4G26455.1 21798944
AT3G25190.1 OQU81760 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G209600.1 Wheat plasma membrane 56.54 67.34
HORVU4Hr1G020210.1 Barley cytosol, peroxisome 62.03 65.62
TraesCS4D01G110600.1 Wheat cytosol, plasma membrane, vacuole 61.18 65.61
Os11t0161900-00 Rice cytosol, nucleus, plasma membrane 54.01 61.84
TraesCS4B01G112900.1 Wheat endoplasmic reticulum 62.45 55.02
GSMUA_Achr9P29610_001 Banana cytosol, peroxisome, vacuole 45.99 53.43
CDY45946 Canola cytosol, peroxisome, vacuole 42.62 52.06
CDY20388 Canola cytosol, peroxisome, vacuole 42.62 52.06
Bra008277.1-P Field mustard cytosol, peroxisome, vacuole 42.62 52.06
AT1G76800.1 Thale cress cytosol, peroxisome, plasma membrane 42.62 51.53
KRH35158 Soybean plasma membrane 43.04 51.52
CDX87566 Canola cytosol, peroxisome, vacuole 41.77 51.03
CDX88318 Canola cytosol, peroxisome, vacuole 41.35 50.52
Bra015718.1-P Field mustard cytosol, peroxisome, vacuole 41.35 50.52
Bra012271.1-P Field mustard cytosol, peroxisome, vacuole 42.62 50.5
CDY71883 Canola cytosol, peroxisome, vacuole 42.62 50.5
Bra025879.1-P Field mustard cytosol, peroxisome, vacuole 42.19 49.75
CDY04601 Canola cytosol, peroxisome, vacuole 42.19 49.75
CDY29473 Canola cytosol, peroxisome, vacuole 42.19 49.75
CDY33672 Canola cytosol, peroxisome, vacuole 40.93 49.74
AT3G43630.1 Thale cress cytosol, peroxisome, plasma membrane 41.77 49.5
AT3G43660.1 Thale cress cytosol, peroxisome, vacuole 41.35 49.49
AT1G21140.1 Thale cress cytosol, peroxisome, plasma membrane 41.35 49.0
CDX96601 Canola cytosol, peroxisome, vacuole 40.93 48.5
VIT_18s0076g00320.t01 Wine grape cytosol, peroxisome, vacuole 45.15 48.42
CDY01332 Canola cytosol, peroxisome, vacuole 42.62 48.1
EES11692 Sorghum cytosol, peroxisome, vacuole 45.57 47.16
PGSC0003DMT400008929 Potato cytosol, peroxisome, vacuole 44.73 46.7
KRH43941 Soybean cytosol, peroxisome, vacuole 42.62 46.54
Bra016431.1-P Field mustard cytosol 21.52 46.36
Solyc04g051180.1.1 Tomato extracellular 32.07 46.06
KRG91640 Soybean cytosol, peroxisome, vacuole 42.19 45.66
VIT_12s0055g00870.t01 Wine grape cytosol, peroxisome, plasma membrane 43.04 45.54
KRH42214 Soybean extracellular 31.22 44.85
VIT_12s0055g00860.t01 Wine grape cytosol, peroxisome, plasma membrane 42.19 44.84
Solyc01g104800.2.1 Tomato cytosol, peroxisome, plasma membrane 38.4 44.39
PGSC0003DMT400032701 Potato plasma membrane 39.66 44.13
PGSC0003DMT400076561 Potato cytosol, peroxisome, plasma membrane 40.51 44.04
KRH42213 Soybean cytosol, endoplasmic reticulum, plasma membrane 40.93 43.89
PGSC0003DMT400076567 Potato plasma membrane 38.82 43.81
KRH08706 Soybean cytosol, peroxisome, vacuole 43.04 43.78
Solyc01g104810.2.1 Tomato plasma membrane 39.66 43.72
PGSC0003DMT400076566 Potato extracellular, plasma membrane, vacuole 29.54 43.48
Solyc01g104820.2.1 Tomato plasma membrane 39.66 43.32
PGSC0003DMT400076565 Potato plasma membrane 39.24 43.26
Solyc01g104780.2.1 Tomato nucleus, peroxisome, vacuole 38.4 42.92
CDY15107 Canola cytosol, peroxisome, plasma membrane 39.24 42.47
PGSC0003DMT400076498 Potato plasma membrane 38.82 42.4
KRH58338 Soybean cytosol, peroxisome, plasma membrane 35.02 42.35
KRH70313 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 42.62 42.26
KRH42212 Soybean plasma membrane 40.93 42.17
Bra013226.1-P Field mustard cytosol, peroxisome, plasma membrane 38.82 42.01
CDY52279 Canola cytosol, peroxisome, plasma membrane 38.82 42.01
KRH58337 Soybean plasma membrane 40.51 41.92
KRH28884 Soybean cytosol, peroxisome, vacuole 40.51 41.74
KRH58339 Soybean cytosol, peroxisome, plasma membrane 39.24 41.7
EES05823 Sorghum plastid 40.93 41.45
AT3G25190.1 Thale cress cytosol, peroxisome, plastid 37.97 41.1
KRH10486 Soybean plasma membrane 32.07 41.08
KRH42215 Soybean cytosol, plastid, vacuole 39.66 41.05
VIT_12s0055g00850.t01 Wine grape cytosol, peroxisome, plasma membrane 35.87 40.28
Solyc01g105260.1.1 Tomato extracellular, vacuole 26.58 39.62
KRH76566 Soybean cytosol, peroxisome, vacuole 38.4 39.06
GSMUA_Achr10P... Banana plasma membrane 43.04 38.93
OQU85755 Sorghum cytosol, mitochondrion, plasma membrane, plastid 31.65 38.66
KRH58340 Soybean plasma membrane 38.4 38.56
KRH58336 Soybean peroxisome, plasma membrane, vacuole 29.11 38.33
EES12569 Sorghum cytosol 40.93 38.19
KRH42211 Soybean cytosol, plasma membrane, vacuole 29.11 32.86
PGSC0003DMT400076558 Potato cytosol, peroxisome, plasma membrane 28.27 32.52
Solyc01g104830.2.1 Tomato cytosol, peroxisome, plasma membrane 27.0 31.37
OQU85754 Sorghum plastid 39.66 30.42
Protein Annotations
EnsemblPlants:OQU82931EnsemblPlantsGene:SORBI_3005G046600GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Ccc1_fam
PANTHER:PTHR31851PANTHER:PTHR31851:SF5PFAM:PF01988ProteinID:OQU82931ProteinID:OQU82931.1SEG:seg
TMHMM:TMhelixUniParc:UPI000B8BA1EBUniProt:A0A1Z5RHB3MapMan:24.2.12.3::
Description
hypothetical protein
Coordinates
chr5:+:4408176..4408889
Molecular Weight (calculated)
23001.7 Da
IEP (calculated)
6.253
GRAVY (calculated)
0.516
Length
237 amino acids
Sequence
(BLAST)
001: MATVSNGDDD GNKLTVVVLG PGTAAAAAVS AGTKPPPPSA RHVQWLRAAV LGASDGLVST AALMLGVGAA RRPGGDADAD DLRGVLLAGL AGLVAGACSM
101: AIGEYVSVHA QLDVELAELK RADEESAAAA GDGDGGAPLD RAEGLSRPGQ AAAASAVSFA AGAAVPLLAA WFVTTGYGAR VAVVVATATA TLAVFGWLGA
201: VLGRAPGGRA GLRAVVGGLV AMGVTYGLMK LCRVHGV
Best Arabidopsis Sequence Match ( AT3G43660.1 )
(BLAST)
001: MESNNNNLNL DMEKDQETTF DYSKRAQWLR AAVLGANDGL VSTASLMMGI GAVKQDVRIM LLTGFAGLVA GACSMAIGEF ISVYSQYDIE VAQMKRESGG
101: ETKKEKLPSP TQAAIASALA FTLGAIVPLL AAAFVKEYKV RIGVIVAAVT LALVMFGWLG AVLGKAPVVK SLVRVLIGGW LAMAITFGFT KLVGSHGL
Arabidopsis Description
Vacuolar iron transporter homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C0]
SUBAcon: [peroxisome,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.