Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 63.85 | 88.31 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 42.96 | 60.6 |
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 41.55 | 59.4 |
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 56.57 | 52.16 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 57.98 | 48.43 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 57.98 | 48.43 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 16.43 | 25.36 |
| CDY17403 | Canola | nucleus | 16.43 | 25.36 |
| Solyc07g066170.2.1 | Tomato | nucleus | 19.01 | 24.18 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 15.73 | 24.01 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 27.7 | 21.77 |
| GSMUA_Achr10P... | Banana | cytosol | 25.59 | 21.63 |
| CDY24192 | Canola | plastid | 14.55 | 20.46 |
| EES14314 | Sorghum | nucleus | 23.24 | 19.57 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 26.29 | 18.82 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 25.82 | 18.52 |
| AT5G56210.1 | Thale cress | nucleus | 21.83 | 18.27 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 17.61 | 17.86 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 16.67 | 17.79 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 16.43 | 17.5 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 17.61 | 16.97 |
| CDX82542 | Canola | plastid | 17.37 | 16.7 |
| PGSC0003DMT400056956 | Potato | nucleus | 23.24 | 16.56 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 23.47 | 16.29 |
| PGSC0003DMT400022426 | Potato | nucleus | 21.83 | 15.87 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 19.01 | 15.64 |
| CDX94330 | Canola | nucleus | 17.84 | 15.48 |
| CDX89333 | Canola | nucleus | 17.84 | 15.35 |
| Bra026434.1-P | Field mustard | nucleus | 17.61 | 15.15 |
| AT4G26455.1 | Thale cress | nucleus | 17.14 | 14.93 |
| KRH56393 | Soybean | cytosol | 20.19 | 14.65 |
| KRH62532 | Soybean | endoplasmic reticulum | 19.48 | 14.19 |
Protein Annotations
| EnsemblPlants:OQU81760 | EnsemblPlantsGene:SORBI_3006G115466 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF7 | ProteinID:OQU81760 |
| ProteinID:OQU81760.1 | SEG:seg | UniParc:UPI000B8B9A8F | UniProt:A0A1Z5RDC9 | MapMan:20.4.2.1.2 | : |
Description
hypothetical protein
Coordinates
chr6:-:48324509..48326665
Molecular Weight (calculated)
49100.7 Da
IEP (calculated)
5.931
GRAVY (calculated)
-0.647
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSPPKLPSD EKAVVLHKLP LPWLGPLDKL FVETSPRKQC RLRRWRRVRR QSPDNPLQLN INFLVLATGY SLGMIGLESV GDCNRKRVWV KDFGFAGKGR
101: KAHRRAVRDR RRASFAESYL IASDAGDAFS NHRHRTMSMN YDGDRSEDRQ SEEVQSAYKR DSDIGEEMII SSEEQNDENE WSWVNQDRNG DPLAESVSSL
201: HTTQQVLENE IQKLSELGKE LEAEESTSGN KDQDVIVLPY AEVDMLELNE KMEHLEQKVK EASNTIREKD LKLSKLQVLI GTTDRAALEE ATASIDQLET
301: ELEHHLQEKL EAEIQCLVML KARQNWQVRA EDRMALEEHR ALSAGDKSRM LLKLRETESK IVMLKEQVDK LEVREKELYR TTEVLKMQSR TFKVSLFGLL
401: QLVMMCLSLK MFFARVSAPF DEVVPT
101: KAHRRAVRDR RRASFAESYL IASDAGDAFS NHRHRTMSMN YDGDRSEDRQ SEEVQSAYKR DSDIGEEMII SSEEQNDENE WSWVNQDRNG DPLAESVSSL
201: HTTQQVLENE IQKLSELGKE LEAEESTSGN KDQDVIVLPY AEVDMLELNE KMEHLEQKVK EASNTIREKD LKLSKLQVLI GTTDRAALEE ATASIDQLET
301: ELEHHLQEKL EAEIQCLVML KARQNWQVRA EDRMALEEHR ALSAGDKSRM LLKLRETESK IVMLKEQVDK LEVREKELYR TTEVLKMQSR TFKVSLFGLL
401: QLVMMCLSLK MFFARVSAPF DEVVPT
001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
Arabidopsis Description
WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.