Factsheet for Bra002835.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002835.1-P
Bra008966.1-P
Bra026434.1-P
Bra026911.1-P
Bra040432.1-P
Bra040752.1-P
Bra040794.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56210.1	Bra040752.1-P	AT1G47200.1	17600715
AT5G56210.1	Bra040794.1-P	AT1G47200.1	17600715
AT5G56210.1	Bra040432.1-P	AT3G63130.1	17600715
AT5G56210.1	Bra040432.1-P	AT3G63130.1	20579133
AT5G56210.1	Bra026434.1-P	AT4G26455.1	17600715
AT5G56210.1	Bra008966.1-P	AT5G11390.1	18591351
AT5G56210.1	Bra026911.1-P	AT5G19320.1	17600715
AT5G56210.1	Bra040752.1-P	AT5G43070.1	17600715
AT5G56210.1	Bra040794.1-P	AT5G43070.1	17600715
AT5G56210.1	Bra002835.1-P	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17403	Canola	nucleus	97.1	97.1
AT5G56210.1	Thale cress	nucleus	55.8	30.26
Solyc07g066170.2.1	Tomato	nucleus	31.88	26.27
TraesCS2B01G351300.1	Wheat	cytosol, golgi, nucleus	26.09	24.16
Zm00001d003334_P001	Maize	cytosol, nucleus, plastid	24.64	22.08
Bra026434.1-P	Field mustard	nucleus	38.77	21.62
Os04t0471300-01	Rice	cytosol, golgi, nucleus	23.55	21.52
OQU81760	Sorghum	nucleus	25.36	16.43
VIT_19s0015g01790.t01	Wine grape	nucleus	36.23	16.29
Bra039387.1-P	Field mustard	cytosol, golgi, nucleus, plastid	21.74	15.0
HORVU2Hr1G081800.3	Barley	cytosol, nucleus	25.0	14.94
PGSC0003DMT400056956	Potato	nucleus	31.52	14.55
TraesCS2A01G331000.1	Wheat	cytosol	26.81	14.51
PGSC0003DMT400022426	Potato	nucleus	30.8	14.51
KRH62532	Soybean	endoplasmic reticulum	30.43	14.36
TraesCS2D01G332000.1	Wheat	cytosol	26.45	14.31
KRH56393	Soybean	cytosol	30.43	14.31
Zm00001d020879_P001	Maize	cytosol, golgi, nucleus, plastid	20.65	14.21
Bra001502.1-P	Field mustard	nucleus, plastid	22.46	14.03
Zm00001d025667_P001	Maize	cytosol	24.64	13.93
GSMUA_Achr10P...	Banana	cytosol	25.36	13.89
Zm00001d005997_P002	Maize	plastid	25.0	12.83
EER96942	Sorghum	cytosol, golgi, nucleus, plastid	25.0	12.73
EES14314	Sorghum	nucleus	21.38	11.66
GSMUA_Achr4P01630_001	Banana	cytosol, golgi, nucleus	25.0	11.6
TraesCS5D01G265600.1	Wheat	nucleus	22.83	11.41
Os08t0497900-01	Rice	nucleus	18.84	11.26
TraesCS5A01G257000.1	Wheat	cytosol, golgi, nucleus, plastid	22.1	11.19
TraesCS5B01G256500.1	Wheat	cytosol, golgi, nucleus, plastid	22.1	11.17
HORVU5Hr1G071910.1	Barley	nucleus	21.74	10.95
Os09t0481300-01	Rice	nucleus	20.65	10.82
TraesCS7D01G238200.1	Wheat	cytosol	20.65	10.61
GSMUA_Achr3P04120_001	Banana	nucleus	22.83	10.61
TraesCS7B01G135800.1	Wheat	cytosol, golgi, nucleus	20.65	10.59
TraesCS7A01G240200.1	Wheat	cytosol	20.65	10.48
HORVU7Hr1G048940.3	Barley	cytosol	19.57	9.46

Protein Annotations

MapMan:20.4.2.1.2	EnsemblPlantsGene:Bra002835	EnsemblPlants:Bra002835.1	EnsemblPlants:Bra002835.1-P	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005737	GO:GO:0006997	GO:GO:0008150	GO:GO:0009504	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0042803	GO:GO:0046982	UniProt:M4CF53
PANTHER:PTHR34562	PANTHER:PTHR34562:SF1	TMHMM:TMhelix	UniParc:UPI000254485B	SEG:seg	:

Description

AT5G56210 (E=3e-072) WIP2 | WIP2 (WPP-domain Interacting Protein 2); protein heterodimerization/ protein homodimerization

Coordinates

chrA10:-:7240156..7241095

Molecular Weight (calculated)

31081.6 Da

IEP (calculated)

4.551

GRAVY (calculated)

-0.473

Length

276 amino acids

Sequence
(BLAST)

001: MMDYDEVNSD HEAHASTEFV KEPEIKNNGS SDDLDPLTEA FNSYHNLQQV LEKELHKFQE LGKESISLLH GGSESSSCVH VGHDQAGEAS SSRWSGSDNT
101: GEKRLTCLDS EVLNLVKNVE HLEIKLEETK RVLDVKESQI RELESTISVS GQGTEMEIGI EDIFQQKIEA EIEHLTFSRS VENLKRKIIL IEEEKALAEA
201: HETLSKLEEA KTKAENLKNQ ALDLQDHCVD IKEIQEVKSF KKRVVKTTSC LLLQLGLLFI LFNVLLVPES ETVVPT

Best Arabidopsis Sequence Match ( AT5G56210.1 )
(BLAST)

001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT

Arabidopsis Description

WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.