Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 58.33 | 49.41 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 55.95 | 47.47 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 18.25 | 30.46 |
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 18.45 | 30.19 |
| Solyc07g066170.2.1 | Tomato | nucleus | 19.64 | 29.55 |
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 17.46 | 29.53 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 30.36 | 28.23 |
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 30.16 | 27.89 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 30.36 | 27.72 |
| Zm00001d005997_P002 | Maize | plastid | 29.37 | 27.51 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 29.76 | 27.47 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 33.13 | 27.2 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 29.37 | 27.01 |
| Os09t0481300-01 | Rice | nucleus | 27.98 | 26.76 |
| EES14314 | Sorghum | nucleus | 26.79 | 26.68 |
| TraesCS7A01G240200.1 | Wheat | cytosol | 28.17 | 26.1 |
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 27.58 | 25.84 |
| OQU81760 | Sorghum | nucleus | 21.63 | 25.59 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 27.18 | 25.51 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 20.24 | 25.44 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 13.89 | 25.36 |
| CDY17403 | Canola | nucleus | 13.69 | 25.0 |
| KRH62532 | Soybean | endoplasmic reticulum | 28.77 | 24.79 |
| CDY24192 | Canola | plastid | 14.88 | 24.75 |
| KRH56393 | Soybean | cytosol | 28.17 | 24.19 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 13.29 | 24.01 |
| Os08t0497900-01 | Rice | nucleus | 21.83 | 23.81 |
| PGSC0003DMT400056956 | Potato | nucleus | 28.17 | 23.75 |
| HORVU7Hr1G048940.3 | Barley | cytosol | 26.79 | 23.64 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 18.45 | 23.25 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 18.25 | 23.06 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 19.05 | 22.86 |
| PGSC0003DMT400022426 | Potato | nucleus | 26.39 | 22.7 |
| AT4G26455.1 | Thale cress | nucleus | 21.83 | 22.49 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 19.25 | 21.95 |
| CDX82542 | Canola | plastid | 19.25 | 21.9 |
| CDX89333 | Canola | nucleus | 21.43 | 21.82 |
| CDX94330 | Canola | nucleus | 21.23 | 21.79 |
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 19.84 | 21.64 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 21.83 | 21.57 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 21.83 | 21.57 |
| Bra026434.1-P | Field mustard | nucleus | 21.03 | 21.41 |
| Zm00001d025667_P001 | Maize | cytosol | 20.63 | 21.31 |
| AT5G56210.1 | Thale cress | nucleus | 21.23 | 21.02 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 21.03 | 20.46 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P03500_001 | EnsemblPlants:GSMUA_Achr10T03500_001 | EnsemblPlantsGene:GSMUA_Achr10G03500_001 | ncoils:Coil | PANTHER:PTHR34562 | SEG:seg |
| UniParc:UPI000295A32C | UniProt:M0RF27 | MapMan:20.4.2.1.2 | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G03500_001]
Coordinates
chr10:-:11435314..11439281
Molecular Weight (calculated)
55546.1 Da
IEP (calculated)
4.849
GRAVY (calculated)
-0.589
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPFGETEVE LRGDLAEEPS RIDSPIETGG ADRVPEERGS VSPAEAVNFS PGGGKANGDL VGGEFSVDSP LNPSGSPSSV AASAKGYGLK KWRRIRRDTS
101: KDVTGNADRT SKSSTAASAP RLQHEVIGFL RDRSRARNIG GKGPGHDVQK RGQWAKRGKT DAGKKIREDQ VKNETENFYS SIESDLMSSN TAFLHMDSMA
201: SNGKQSEKYV NYDGDDAQPS EEVRSCFYKD NGGVGALLRE DLETNRSGEK NYNKFENIHP GSDLDPFLES IVSLQATKEA LENEIRNFGE IGKVMIFDDA
301: NGQYEETEGI SSPAVEANFV DLNQKIEQLE CKLGEALTSV KAKESKVLEL KAILSRTGWP NKDIDSTNIS SLQEKCKEME IELENLLVKK IEAEIEYLVL
401: TITTQSWKVV AEDHIASLEQ QRTLSGDKPK ATHKVKYAEN ETVIFRGVTE ELEKDLSETK EVLRLQGRVF KYSVCCFVQM VILCIAFELF LLHLLPSSSG
501: VTPT
101: KDVTGNADRT SKSSTAASAP RLQHEVIGFL RDRSRARNIG GKGPGHDVQK RGQWAKRGKT DAGKKIREDQ VKNETENFYS SIESDLMSSN TAFLHMDSMA
201: SNGKQSEKYV NYDGDDAQPS EEVRSCFYKD NGGVGALLRE DLETNRSGEK NYNKFENIHP GSDLDPFLES IVSLQATKEA LENEIRNFGE IGKVMIFDDA
301: NGQYEETEGI SSPAVEANFV DLNQKIEQLE CKLGEALTSV KAKESKVLEL KAILSRTGWP NKDIDSTNIS SLQEKCKEME IELENLLVKK IEAEIEYLVL
401: TITTQSWKVV AEDHIASLEQ QRTLSGDKPK ATHKVKYAEN ETVIFRGVTE ELEKDLSETK EVLRLQGRVF KYSVCCFVQM VILCIAFELF LLHLLPSSSG
501: VTPT
001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
Arabidopsis Description
WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.