Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- golgi 3
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G67210.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 71.34 | 81.25 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 76.83 | 76.83 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 69.82 | 70.25 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 46.65 | 64.02 |
| Zm00001d014532_P001 | Maize | plasma membrane | 56.4 | 57.63 |
| EER88850 | Sorghum | plastid | 57.62 | 56.93 |
| VIT_03s0063g00030.t01 | Wine grape | plastid | 37.5 | 55.91 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 55.79 | 55.79 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 54.88 | 55.05 |
| OQU84413 | Sorghum | golgi, mitochondrion | 52.74 | 54.06 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 53.05 | 53.87 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 49.09 | 53.49 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 55.18 | 53.39 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 55.49 | 53.37 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 53.96 | 53.31 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 55.49 | 53.22 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 50.91 | 52.85 |
| Os06t0687600-00 | Rice | golgi | 53.96 | 52.68 |
| TraesCS2B01G540300.1 | Wheat | golgi | 50.61 | 52.53 |
| TraesCS2A01G512400.1 | Wheat | golgi | 50.3 | 52.22 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 53.05 | 51.33 |
| PGSC0003DMT400065494 | Potato | golgi, plasma membrane, plastid | 46.34 | 50.33 |
| VIT_07s0031g00110.t01 | Wine grape | golgi | 47.56 | 50.32 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 50.0 | 50.15 |
| KRH77040 | Soybean | mitochondrion | 46.04 | 49.67 |
| PGSC0003DMT400064322 | Potato | plastid | 46.34 | 49.35 |
| KRH28432 | Soybean | mitochondrion | 46.34 | 49.35 |
| Os04t0649900-01 | Rice | mitochondrion | 47.56 | 49.06 |
| Solyc02g093090.1.1 | Tomato | extracellular, nucleus | 45.73 | 48.7 |
| Zm00001d002066_P001 | Maize | plasma membrane | 49.39 | 48.36 |
| PGSC0003DMT400066571 | Potato | endoplasmic reticulum, golgi, mitochondrion, plastid | 46.04 | 48.09 |
| Solyc01g107800.2.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion, plastid | 46.04 | 48.09 |
| KRH50341 | Soybean | golgi, plastid | 45.43 | 47.91 |
| KRH57814 | Soybean | mitochondrion | 46.04 | 47.78 |
| CDX81329 | Canola | plastid | 44.82 | 47.73 |
| CDY30600 | Canola | endoplasmic reticulum, golgi | 46.65 | 47.22 |
| Bra036059.1-P | Field mustard | endoplasmic reticulum, golgi, plastid | 46.65 | 47.22 |
| CDY17753 | Canola | endoplasmic reticulum, golgi | 46.65 | 47.22 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 46.34 | 47.2 |
| KRH04549 | Soybean | plastid | 45.12 | 46.98 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 45.12 | 46.69 |
| CDY12819 | Canola | golgi, mitochondrion, plasma membrane, plastid | 44.82 | 46.67 |
| Bra012143.1-P | Field mustard | plastid | 44.51 | 46.35 |
| KRH70689 | Soybean | plastid | 45.43 | 46.13 |
| CDY01429 | Canola | golgi, mitochondrion, plasma membrane, plastid | 44.21 | 46.03 |
| Os02t0158500-00 | Rice | plastid | 54.57 | 45.66 |
| Bra013107.1-P | Field mustard | plastid | 41.77 | 41.77 |
| CDY13145 | Canola | plastid | 41.46 | 41.46 |
| CDX89660 | Canola | plastid | 41.16 | 40.79 |
| CDY62313 | Canola | plastid | 39.63 | 40.62 |
| AT2G15440.1 | Thale cress | plastid | 40.24 | 40.12 |
| Bra039840.1-P | Field mustard | plastid | 39.02 | 39.38 |
| CDY37228 | Canola | plastid | 38.72 | 39.32 |
| GSMUA_Achr8P29140_001 | Banana | endoplasmic reticulum, golgi | 31.4 | 36.92 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, golgi | 26.52 | 34.52 |
| GSMUA_Achr9P01440_001 | Banana | golgi | 27.13 | 33.97 |
| GSMUA_Achr9P01430_001 | Banana | extracellular | 29.27 | 33.33 |
| GSMUA_Achr3P19550_001 | Banana | mitochondrion | 28.96 | 33.1 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular, golgi | 25.91 | 33.07 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P03360_001 | EnsemblPlants:GSMUA_Achr8T03360_001 | EnsemblPlantsGene:GSMUA_Achr8G03360_001 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045492 |
| InterPro:IRX15/IRX15L/IGXM | InterPro:Polysacc_synth_dom | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF0 | PFAM:PF04669 | SEG:seg |
| TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI000294B2E9 | UniProt:M0TM88 | MapMan:35.1 | : |
Description
plant-specific domain TIGR01627 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G03360_001]
Coordinates
chr8:-:2334036..2335022
Molecular Weight (calculated)
35342.3 Da
IEP (calculated)
8.149
GRAVY (calculated)
-0.019
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGFGSTKLI FLQPSSISKQ GGNGITTSIS ILVSHHHRVW LLALLAFFTF VSLVTLLNTT TARDPNGLPS SAVLSAGSVS SRPPPLLPAP VFDSLVNYAV
101: FSNSTGKMEE GDLRKVAGVL RLRGPCNLLV FGLGHETPLW RALNHGGRTV FVDENEYYVA HVEGRNPGVE AYDVAYTTKV REMPELIAAA RRHRRGDCRP
201: VQNLLFSDCR LAINDLPNQL YDVPWDVILV DGPKGYSATE PGRMSAIFTA AVMARSGGPG HVDVLVHEYD RKVEKLCSAE FLCPENLVAA TRSLAHFRIR
301: GGPADEFCAN QADTASLSSP AGGKAAAS
101: FSNSTGKMEE GDLRKVAGVL RLRGPCNLLV FGLGHETPLW RALNHGGRTV FVDENEYYVA HVEGRNPGVE AYDVAYTTKV REMPELIAAA RRHRRGDCRP
201: VQNLLFSDCR LAINDLPNQL YDVPWDVILV DGPKGYSATE PGRMSAIFTA AVMARSGGPG HVDVLVHEYD RKVEKLCSAE FLCPENLVAA TRSLAHFRIR
301: GGPADEFCAN QADTASLSSP AGGKAAAS
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Arabidopsis Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.