Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P29140_001 | Banana | endoplasmic reticulum, golgi | 63.1 | 56.99 |
| VIT_12s0035g01340.t01 | Wine grape | golgi | 57.14 | 50.7 |
| Bra030789.1-P | Field mustard | endoplasmic reticulum, golgi | 56.35 | 50.53 |
| CDY20685 | Canola | endoplasmic reticulum, golgi, plasma membrane | 55.95 | 50.18 |
| VIT_00s0238g00020.t01 | Wine grape | extracellular, plasma membrane | 59.52 | 50.0 |
| VIT_12s0035g01170.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 57.14 | 49.66 |
| AT1G09610.1 | Thale cress | endoplasmic reticulum, golgi | 55.56 | 49.65 |
| KRH06044 | Soybean | endoplasmic reticulum, golgi, vacuole | 55.16 | 49.64 |
| CDY31075 | Canola | endoplasmic reticulum, golgi, plasma membrane | 55.16 | 49.47 |
| Solyc01g103360.2.1 | Tomato | plasma membrane | 53.97 | 49.45 |
| Solyc11g031950.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 56.75 | 48.64 |
| AT4G09990.1 | Thale cress | golgi | 55.56 | 48.28 |
| CDY15292 | Canola | golgi | 55.56 | 47.3 |
| CDX93751 | Canola | golgi | 55.56 | 47.3 |
| Bra028013.1-P | Field mustard | golgi | 55.56 | 47.3 |
| PGSC0003DMT400064018 | Potato | plasma membrane | 51.59 | 47.1 |
| PGSC0003DMT400080082 | Potato | endoplasmic reticulum, golgi | 57.54 | 47.08 |
| CDY48797 | Canola | golgi, plasma membrane | 55.16 | 46.8 |
| KRH64803 | Soybean | golgi, plasma membrane | 56.75 | 46.73 |
| Bra034460.1-P | Field mustard | golgi, plasma membrane, vacuole | 54.76 | 46.46 |
| CDX96332 | Canola | endoplasmic reticulum, extracellular | 53.57 | 45.61 |
| Bra016131.1-P | Field mustard | endoplasmic reticulum, extracellular | 53.57 | 45.61 |
| AT1G33800.1 | Thale cress | golgi, plasma membrane | 53.57 | 45.45 |
| TraesCS5D01G319700.1 | Wheat | mitochondrion | 52.78 | 44.63 |
| CDY37946 | Canola | extracellular | 46.83 | 44.53 |
| AT1G71690.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 51.98 | 44.41 |
| Solyc06g064800.1.1 | Tomato | extracellular, golgi | 46.43 | 44.32 |
| TraesCS5A01G313000.1 | Wheat | mitochondrion | 52.38 | 44.15 |
| HORVU5Hr1G080580.1 | Barley | endoplasmic reticulum, mitochondrion, plastid | 52.38 | 44.0 |
| TraesCS5B01G313900.1 | Wheat | golgi, unclear | 52.38 | 44.0 |
| CDX72815 | Canola | endoplasmic reticulum, extracellular | 51.98 | 43.52 |
| TraesCS7A01G560100.1 | Wheat | mitochondrion, plastid | 51.98 | 43.38 |
| Os12t0204500-01 | Rice | endoplasmic reticulum, golgi | 50.4 | 43.05 |
| TraesCS7B01G485000.1 | Wheat | mitochondrion, plastid | 51.19 | 42.86 |
| TraesCS7D01G549800.1 | Wheat | mitochondrion, plastid | 51.59 | 42.48 |
| VIT_00s0238g00030.t01 | Wine grape | extracellular, plasma membrane | 39.68 | 41.32 |
| EES16857 | Sorghum | mitochondrion | 49.6 | 41.25 |
| GSMUA_Achr3P19550_001 | Banana | mitochondrion | 42.06 | 36.93 |
| HORVU7Hr1G120340.1 | Barley | plastid | 51.19 | 36.13 |
| GSMUA_Achr9P01430_001 | Banana | extracellular | 40.08 | 35.07 |
| TraesCS4B01G089200.1 | Wheat | mitochondrion | 44.84 | 34.98 |
| TraesCS4A01G227100.1 | Wheat | mitochondrion | 44.84 | 34.88 |
| TraesCS4D01G086700.1 | Wheat | mitochondrion | 44.84 | 34.66 |
| Zm00001d003239_P001 | Maize | cytosol | 21.43 | 32.34 |
| HORVU4Hr1G015310.3 | Barley | endoplasmic reticulum, plastid | 43.65 | 31.07 |
| EES08266 | Sorghum | mitochondrion | 40.08 | 30.79 |
| Os11t0242600-00 | Rice | mitochondrion | 38.49 | 30.7 |
| KRH50678 | Soybean | cytosol | 8.33 | 29.58 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 36.9 | 28.53 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 34.52 | 26.52 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular, golgi | 26.59 | 26.07 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 33.73 | 25.91 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 29.37 | 25.69 |
| GSMUA_Achr9P01440_001 | Banana | golgi | 26.19 | 25.19 |
| KRH50677 | Soybean | mitochondrion | 9.13 | 20.91 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P04440_001 | EnsemblPlants:GSMUA_Achr10T04440_001 | EnsemblPlantsGene:GSMUA_Achr10G04440_001 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045492 | InterPro:IRX15/IRX15L/IGXM | InterPro:Polysacc_synth_dom | PANTHER:PTHR31444 |
| PANTHER:PTHR31444:SF2 | PFAM:PF04669 | SEG:seg | TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI0002958A2B |
| UniProt:M0RFC1 | MapMan:35.1 | : | : | : | : |
Description
plant-specific domain TIGR01627 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G04440_001]
Coordinates
chr10:-:14093287..14094117
Molecular Weight (calculated)
28644.8 Da
IEP (calculated)
8.365
GRAVY (calculated)
-0.143
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPKMQKIFS LKLLISVLFL LFVLYWVMSP SSFRLQQQAL SVPSTPPSCT KLPPSLADAI LHYATLNITP QQTIDEISVA ARVLREKSPC NFLEDEGWIE
101: AWRLRLLPVV AETYHVKYDT RVSEAEQLLE LGARADCKAV GDLRRSGCRL ALKQLPPVFY EVEWDLIMVD APTGYHAGAP GRMAAIYTAG VAARWRKEGK
201: TEVFVHDVDR AVEDRFSKAF LCEGYMKHEE GRLRHFTIPS HRANTERPFC PP
101: AWRLRLLPVV AETYHVKYDT RVSEAEQLLE LGARADCKAV GDLRRSGCRL ALKQLPPVFY EVEWDLIMVD APTGYHAGAP GRMAAIYTAG VAARWRKEGK
201: TEVFVHDVDR AVEDRFSKAF LCEGYMKHEE GRLRHFTIPS HRANTERPFC PP
001: MRNKSQSFIS SKLIFICCSI LVLFILFLKR ASFSSNSTAT IRDEYHQKSK CPSTPQQCTK LPTSLSDALV HYVTSEITPQ QTFDEVSVSK RVLDKKSPCN
101: FLVFGLGHDS LMWASLNHGG RTLFLEEDEA WIETVTKKFP NLESYHVVYD TKVKDSNKLM ELKRTEDCKA VSDPRDSKCA LSLKGFPADV YETQWDVIMV
201: DAPTGYHDEA PGRMSAIYTA GLLARNRYDG GETDVFVHDI NRPVEDEFSV AFLCGGYMKE QQGRLRHFNI PSHRASFGTP FCPADISRRF
101: FLVFGLGHDS LMWASLNHGG RTLFLEEDEA WIETVTKKFP NLESYHVVYD TKVKDSNKLM ELKRTEDCKA VSDPRDSKCA LSLKGFPADV YETQWDVIMV
201: DAPTGYHDEA PGRMSAIYTA GLLARNRYDG GETDVFVHDI NRPVEDEFSV AFLCGGYMKE QQGRLRHFNI PSHRASFGTP FCPADISRRF
Arabidopsis Description
GXM2Glucuronoxylan 4-O-methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0F7]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.