Factsheet for Solyc11g031950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g120880.2.1
Solyc05g015640.2.1
Solyc07g066170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33800.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT1G33800.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT1G33800.1	Solyc07g066170.2.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080082	Potato	endoplasmic reticulum, golgi	91.84	87.66
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	68.03	66.67
KRH64803	Soybean	golgi, plasma membrane	65.65	63.07
Solyc01g103360.2.1	Tomato	plasma membrane	56.46	60.36
CDY48797	Canola	golgi, plasma membrane	59.86	59.26
Bra028013.1-P	Field mustard	golgi	59.52	59.12
CDX93751	Canola	golgi	59.52	59.12
CDY15292	Canola	golgi	59.52	59.12
Bra034460.1-P	Field mustard	golgi, plasma membrane, vacuole	59.52	58.92
AT1G33800.1	Thale cress	golgi, plasma membrane	58.84	58.25
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	55.1	58.06
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	47.28	57.44
AT4G09990.1	Thale cress	golgi	56.46	57.24
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	48.64	56.75
Solyc06g064800.1.1	Tomato	extracellular, golgi	50.68	56.44
AT1G71690.1	Thale cress	endoplasmic reticulum, golgi, plastid	55.1	54.92
Bra016131.1-P	Field mustard	endoplasmic reticulum, extracellular	54.76	54.39
CDX96332	Canola	endoplasmic reticulum, extracellular	54.76	54.39
TraesCS5D01G319700.1	Wheat	mitochondrion	54.08	53.36
TraesCS5A01G313000.1	Wheat	mitochondrion	54.08	53.18
CDX72815	Canola	endoplasmic reticulum, extracellular	54.42	53.16
HORVU5Hr1G080580.1	Barley	endoplasmic reticulum, mitochondrion, plastid	53.74	52.67
TraesCS5B01G313900.1	Wheat	golgi, unclear	53.74	52.67
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	53.4	52.16
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	53.4	51.99
TraesCS7D01G549800.1	Wheat	mitochondrion, plastid	53.74	51.63
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	51.02	50.85
EES16857	Sorghum	mitochondrion	52.04	50.49
CDY37946	Canola	extracellular	42.52	47.17
Solyc11g020540.1.1	Tomato	cytosol	10.2	44.78
HORVU7Hr1G120340.1	Barley	plastid	53.4	43.98
TraesCS4A01G227100.1	Wheat	mitochondrion	45.58	41.36
TraesCS4B01G089200.1	Wheat	mitochondrion	45.24	41.18
TraesCS4D01G086700.1	Wheat	mitochondrion	45.24	40.8
Solyc07g015920.1.1	Tomato	extracellular	36.39	38.91
HORVU4Hr1G015310.3	Barley	endoplasmic reticulum, plastid	44.56	37.01
Os11t0242600-00	Rice	mitochondrion	38.78	36.08
EES08266	Sorghum	mitochondrion	38.78	34.76
Solyc11g020470.1.1	Tomato	cytosol	16.33	31.79
Solyc02g093090.1.1	Tomato	extracellular, nucleus	32.31	30.84
Solyc01g107800.2.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	29.59	27.71
Solyc03g110890.1.1	Tomato	plasma membrane, vacuole	27.55	26.91

Protein Annotations

EnsemblPlants:Solyc11g031950.1.1	EnsemblPlantsGene:Solyc11g031950.1	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF2
PFAM:PF04669	SEG:seg	TIGRFAMs:TIGR01627	TMHMM:TMhelix	UniParc:UPI0002769AE6	UniProt:K4D7N0
MapMan:21.2.2.2.3	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:24079500..24080384

Molecular Weight (calculated)

32952.3 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.310

Length

294 amino acids

Sequence
(BLAST)

001: MRSKNQSPIN VKLILIGIIL VFLLFLVLRS TYSPSPDQQT KSLVSKSSSS SQDEETDHQS SEACPSNTCN KISPSLANAL VHYATSNVTP QQTLKEISVS
101: LKVLEKKSPS NFLVFGLGHD SLMWTALNHG GRTVFLEEDK SWIEQIQSQL PNLESYHVIY DTRITQADEL MEIGMSNEDC KKVTDPRLSK CQLALKGLPQ
201: QVLEIDWDLI MVDAPTGWHD GAPGRMSAIY TAGLIARNKQ EGETHVFVHD VDRVVEDQFS KAFLCEGYLL QQEGRIRHFN IPSHKARLGR PFCP

Best Arabidopsis Sequence Match ( AT1G33800.1 )
(BLAST)

001: MRTKSPSSLN LKVIFIGSSI LILIIIYLAR SNISSSSSKP ISKTNLSQEE EETQHKQEGC PTTQQCTKMP LSLSDALVHY VTSNVTPQQT FDEVSVSKRV
101: LDKKSPCNFL VFGLGHDSLM WASLNHGGRT LFIEEDQAWI AIVTKKFPNL ESYHVVYDTK VKDSDKLMEL GRSEECRSVS DPRNSKCDLA LKDFPADFYE
201: TKWDLIMVDA PTGYHEEAPG RMSAIYTAGL LARNREDGET DVFVHDVNRP VEDEFSATFL CKGYMREQNG RLRHFTIPSH RARAGRPFCP VEVDRRR

Arabidopsis Description

GXM3GXMT1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7W0]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.