Factsheet for Bra028013.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra026434.1-P
Bra027174.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33800.1	Bra030034.1-P	AT1G27300.1	21798944
AT1G33800.1	Bra032817.1-P	AT1G27300.1	21798944
AT1G33800.1	Bra027174.1-P	AT3G16310.1	21798944
AT1G33800.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93751	Canola	golgi	100.0	100.0
CDY15292	Canola	golgi	99.66	99.66
Bra034460.1-P	Field mustard	golgi, plasma membrane, vacuole	93.24	92.93
AT1G33800.1	Thale cress	golgi, plasma membrane	90.88	90.57
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	63.51	62.67
Bra030789.1-P	Field mustard	endoplasmic reticulum, golgi	56.76	59.79
Solyc11g031950.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	59.12	59.52
PGSC0003DMT400080082	Potato	endoplasmic reticulum, golgi	60.81	58.44
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	54.73	58.06
Bra016131.1-P	Field mustard	endoplasmic reticulum, extracellular	56.42	56.42
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	47.3	55.56
KRH64803	Soybean	golgi, plasma membrane	56.42	54.58
Solyc06g064800.1.1	Tomato	extracellular, golgi	48.31	54.17
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	44.26	54.13
TraesCS5D01G319700.1	Wheat	mitochondrion	50.68	50.34
HORVU5Hr1G080580.1	Barley	endoplasmic reticulum, mitochondrion, plastid	51.01	50.33
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	51.01	50.0
TraesCS5B01G313900.1	Wheat	golgi, unclear	50.68	50.0
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	50.68	49.83
TraesCS5A01G313000.1	Wheat	mitochondrion	50.34	49.83
TraesCS7D01G549800.1	Wheat	mitochondrion, plastid	50.68	49.02
EES16857	Sorghum	mitochondrion	49.66	48.51
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	46.96	47.12
Bra034005.1-P	Field mustard	endoplasmic reticulum, golgi	41.89	43.06
HORVU7Hr1G120340.1	Barley	plastid	51.35	42.58
Bra032854.1-P	Field mustard	endoplasmic reticulum	40.54	41.52
Bra004093.1-P	Field mustard	endoplasmic reticulum, golgi	40.54	41.24
Bra030066.1-P	Field mustard	endoplasmic reticulum, plasma membrane	40.2	41.18
TraesCS4D01G086700.1	Wheat	mitochondrion	44.93	40.8
TraesCS4A01G227100.1	Wheat	mitochondrion	44.59	40.74
TraesCS4B01G089200.1	Wheat	mitochondrion	44.26	40.56
HORVU4Hr1G015310.3	Barley	endoplasmic reticulum, plastid	45.27	37.85
EES08266	Sorghum	mitochondrion	40.54	36.59
Bra013845.1-P	Field mustard	cytosol	21.96	36.31
Os11t0242600-00	Rice	mitochondrion	38.51	36.08
Bra012143.1-P	Field mustard	plastid	30.74	28.89
Bra039840.1-P	Field mustard	plastid	30.74	28.0
Bra036059.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	30.07	27.47
Bra013107.1-P	Field mustard	plastid	30.41	27.44
Bra019203.1-P	Field mustard	plastid	25.68	24.36

Protein Annotations

EnsemblPlants:Bra028013.1	EnsemblPlants:Bra028013.1-P	EnsemblPlantsGene:Bra028013	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0045492
InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF2	PFAM:PF04669	TIGRFAMs:TIGR01627
TMHMM:TMhelix	UniParc:UPI00025421F2	UniProt:M4EGU8	MapMan:21.2.2.2.3	:	:

Description

AT1G33800 (E=1e-155) | unknown protein

Coordinates

chrA09:-:19380569..19381523

Molecular Weight (calculated)

33694.1 Da

IEP (calculated)

7.739

GRAVY (calculated)

-0.489

Length

296 amino acids

Sequence
(BLAST)

001: MRTKSQSSVN LKVIFTCCSI LIFLVIFFAR SNISSSKPIS KTNLSQEKEE QDQAKPEGCP TTQQCTKMPI SLSDALVHYA TSNVTPQQTF DEISVSKRVL
101: DKKSPCNFLV FGLGHDSPMW ASLNHGGRTL FIEEDKAWIE IVTKKFPNLE AYHVVYDTKV KHSDKLMELG RSEECRSVTD PRNSKCELAL KDFPADFYET
201: KWDLIMVDAP TGYHEEAPGR MSAIYTAGLL ARNREDGETD VFVHDVNRPV EDEFSATFLC KGYMREQNGR LRHFTIPSHR ARAGRPFCPV DVNRRR

Best Arabidopsis Sequence Match ( AT1G33800.1 )
(BLAST)

001: MRTKSPSSLN LKVIFIGSSI LILIIIYLAR SNISSSSSKP ISKTNLSQEE EETQHKQEGC PTTQQCTKMP LSLSDALVHY VTSNVTPQQT FDEVSVSKRV
101: LDKKSPCNFL VFGLGHDSLM WASLNHGGRT LFIEEDQAWI AIVTKKFPNL ESYHVVYDTK VKDSDKLMEL GRSEECRSVS DPRNSKCDLA LKDFPADFYE
201: TKWDLIMVDA PTGYHEEAPG RMSAIYTAGL LARNREDGET DVFVHDVNRP VEDEFSATFL CKGYMREQNG RLRHFTIPSH RARAGRPFCP VEVDRRR

Arabidopsis Description

GXM3GXMT1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7W0]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.