Factsheet for VIT_00s0238g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_09s0002g03770.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33800.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT1G33800.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT1G33800.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	84.71	68.33
Solyc11g031950.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	57.44	47.28
PGSC0003DMT400080082	Potato	endoplasmic reticulum, golgi	59.5	46.75
AT4G09990.1	Thale cress	golgi	54.55	45.52
KRH64803	Soybean	golgi, plasma membrane	57.44	45.42
CDY48797	Canola	golgi, plasma membrane	54.96	44.78
Bra034460.1-P	Field mustard	golgi, plasma membrane, vacuole	54.55	44.44
Bra028013.1-P	Field mustard	golgi	54.13	44.26
CDX93751	Canola	golgi	54.13	44.26
CDY15292	Canola	golgi	54.13	44.26
VIT_12s0035g01340.t01	Wine grape	golgi	51.65	44.01
AT1G33800.1	Thale cress	golgi, plasma membrane	53.72	43.77
VIT_12s0035g01170.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	51.65	43.1
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	48.76	42.29
CDX96332	Canola	endoplasmic reticulum, extracellular	50.0	40.88
Bra016131.1-P	Field mustard	endoplasmic reticulum, extracellular	50.0	40.88
AT1G71690.1	Thale cress	endoplasmic reticulum, golgi, plastid	48.76	40.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	41.32	39.68
CDX72815	Canola	endoplasmic reticulum, extracellular	48.76	39.2
Solyc06g064800.1.1	Tomato	extracellular, golgi	39.26	35.98
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	42.15	34.58
TraesCS5D01G319700.1	Wheat	mitochondrion	42.56	34.56
TraesCS5A01G313000.1	Wheat	mitochondrion	42.56	34.45
CDY37946	Canola	extracellular	37.6	34.34
TraesCS5B01G313900.1	Wheat	golgi, unclear	42.56	34.33
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	42.15	33.77
HORVU5Hr1G080580.1	Barley	endoplasmic reticulum, mitochondrion, plastid	41.74	33.67
TraesCS7D01G549800.1	Wheat	mitochondrion, plastid	42.56	33.66
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	41.74	33.55
EES16857	Sorghum	mitochondrion	40.5	32.34
VIT_01s0010g03680.t01	Wine grape	endoplasmic reticulum, golgi	34.71	29.89
HORVU7Hr1G120340.1	Barley	plastid	42.98	29.13
VIT_14s0068g01970.t01	Wine grape	endoplasmic reticulum, plasma membrane	33.88	29.08
TraesCS4D01G086700.1	Wheat	mitochondrion	38.43	28.53
TraesCS4B01G089200.1	Wheat	mitochondrion	37.6	28.17
TraesCS4A01G227100.1	Wheat	mitochondrion	37.6	28.09
VIT_03s0063g00030.t01	Wine grape	plastid	24.38	26.82
HORVU4Hr1G015310.3	Barley	endoplasmic reticulum, plastid	37.19	25.42
Os11t0242600-00	Rice	mitochondrion	31.41	24.05
EES08266	Sorghum	mitochondrion	30.58	22.56
VIT_07s0031g00110.t01	Wine grape	golgi	28.51	22.26

Protein Annotations

MapMan:35.1	ProteinID:CCB62839	ProteinID:CCB62839.1	UniProt:F6I7C1	EMBL:FN596774	GO:GO:0005575
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	PFAM:PF04669	PANTHER:PTHR31444	PANTHER:PTHR31444:SF2
InterPro:Polysacc_synth_dom	TIGRFAMs:TIGR01627	TMHMM:TMhelix	UniParc:UPI0002108EFC	ArrayExpress:VIT_00s0238g00030	EnsemblPlantsGene:VIT_00s0238g00030
EnsemblPlants:VIT_00s0238g00030.t01	RefSeq:XP_002277141	RefSeq:XP_002277141.2	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:16183224..16194962

Molecular Weight (calculated)

27318.8 Da

IEP (calculated)

5.793

GRAVY (calculated)

-0.122

Length

242 amino acids

Sequence
(BLAST)

001: MRPSETQNSI NLKLILICFL CLLFFLLVFK SNFTPFRENH PSPILETHVS SSTCPATEEQ LLSPACPSLL FTPTCTKTPP SLAQALVHYA TLNVTPQQTF
101: NEISVTSRVL QKKAPCNFLV FGLGHDSLMW TALNHGGRTV FLEEDKSWME RIKQKFPSVE SYYVVYDTKV HEADELLEVG MGEDCKVVAD PRFSKYKLSL
201: KGFPNEVYDV EWDLIMVDAP TGYHDEAPGR IDGCHLHCRV DG

Best Arabidopsis Sequence Match ( AT4G09990.1 )
(BLAST)

001: MRNKSQSFIS SKLIFICCSI LVLFILFLKR ASFSSNSTAT IRDEYHQKSK CPSTPQQCTK LPTSLSDALV HYVTSEITPQ QTFDEVSVSK RVLDKKSPCN
101: FLVFGLGHDS LMWASLNHGG RTLFLEEDEA WIETVTKKFP NLESYHVVYD TKVKDSNKLM ELKRTEDCKA VSDPRDSKCA LSLKGFPADV YETQWDVIMV
201: DAPTGYHDEA PGRMSAIYTA GLLARNRYDG GETDVFVHDI NRPVEDEFSV AFLCGGYMKE QQGRLRHFNI PSHRASFGTP FCPADISRRF

Arabidopsis Description

GXM2Glucuronoxylan 4-O-methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0F7]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.