Subcellular Localization
min:
: max
Winner_takes_all: golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 3
- vacuole 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034460.1-P | Field mustard | golgi, plasma membrane, vacuole | 91.58 | 91.58 |
| CDY48797 | Canola | golgi, plasma membrane | 91.25 | 91.25 |
| Bra028013.1-P | Field mustard | golgi | 90.57 | 90.88 |
| CDX93751 | Canola | golgi | 90.57 | 90.88 |
| CDY15292 | Canola | golgi | 90.57 | 90.88 |
| AT4G09990.1 | Thale cress | golgi | 74.41 | 76.21 |
| VIT_00s0238g00020.t01 | Wine grape | extracellular, plasma membrane | 62.29 | 61.67 |
| AT1G09610.1 | Thale cress | endoplasmic reticulum, golgi | 56.9 | 59.93 |
| Solyc11g031950.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 58.25 | 58.84 |
| GSMUA_Achr8P29140_001 | Banana | endoplasmic reticulum, golgi | 53.87 | 57.35 |
| PGSC0003DMT400080082 | Potato | endoplasmic reticulum, golgi | 59.26 | 57.14 |
| AT1G71690.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 55.22 | 55.59 |
| KRH64803 | Soybean | golgi, plasma membrane | 56.57 | 54.9 |
| VIT_00s0238g00030.t01 | Wine grape | extracellular, plasma membrane | 43.77 | 53.72 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, golgi | 45.45 | 53.57 |
| Solyc06g064800.1.1 | Tomato | extracellular, golgi | 46.46 | 52.27 |
| HORVU5Hr1G080580.1 | Barley | endoplasmic reticulum, mitochondrion, plastid | 50.17 | 49.67 |
| TraesCS5D01G319700.1 | Wheat | mitochondrion | 49.83 | 49.66 |
| TraesCS7A01G560100.1 | Wheat | mitochondrion, plastid | 50.17 | 49.34 |
| TraesCS5B01G313900.1 | Wheat | golgi, unclear | 49.83 | 49.33 |
| TraesCS7B01G485000.1 | Wheat | mitochondrion, plastid | 49.83 | 49.17 |
| TraesCS5A01G313000.1 | Wheat | mitochondrion | 49.49 | 49.16 |
| TraesCS7D01G549800.1 | Wheat | mitochondrion, plastid | 49.83 | 48.37 |
| EES16857 | Sorghum | mitochondrion | 49.16 | 48.18 |
| Os12t0204500-01 | Rice | endoplasmic reticulum, golgi | 46.8 | 47.12 |
| TraesCS4D01G086700.1 | Wheat | mitochondrion | 46.8 | 42.64 |
| TraesCS4B01G089200.1 | Wheat | mitochondrion | 46.13 | 42.41 |
| TraesCS4A01G227100.1 | Wheat | mitochondrion | 46.13 | 42.28 |
| AT1G67330.1 | Thale cress | endoplasmic reticulum, golgi | 41.08 | 41.92 |
| HORVU7Hr1G120340.1 | Barley | plastid | 50.17 | 41.74 |
| AT1G27930.1 | Thale cress | endoplasmic reticulum, plasma membrane | 39.73 | 40.83 |
| HORVU4Hr1G015310.3 | Barley | endoplasmic reticulum, plastid | 46.8 | 39.27 |
| Os11t0242600-00 | Rice | mitochondrion | 38.05 | 35.76 |
| EES08266 | Sorghum | mitochondrion | 39.39 | 35.67 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 30.3 | 28.39 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 30.64 | 28.26 |
| AT2G15440.1 | Thale cress | plastid | 30.64 | 27.66 |
| AT4G24910.1 | Thale cress | plastid | 27.95 | 26.35 |
Protein Annotations
| MapMan:21.2.2.2.3 | EntrezGene:840272 | UniProt:A0A178W7W0 | ProteinID:AAF97282.1 | ProteinID:AEE31626.1 | ArrayExpress:AT1G33800 |
| EnsemblPlantsGene:AT1G33800 | RefSeq:AT1G33800 | TAIR:AT1G33800 | RefSeq:AT1G33800-TAIR-G | EnsemblPlants:AT1G33800.1 | TAIR:AT1G33800.1 |
| EMBL:AY070772 | EMBL:AY084664 | EMBL:AY097395 | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005975 |
| GO:GO:0005976 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009058 | GO:GO:0009808 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0019748 | GO:GO:0030775 |
| GO:GO:0032259 | GO:GO:0045491 | GO:GO:0045492 | InterPro:IRX15/IRX15L/IGXM | EMBL:JX914596 | RefSeq:NP_564428.1 |
| ProteinID:OAP14236.1 | PFAM:PF04669 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31444 |
| PANTHER:PTHR31444:SF2 | InterPro:Polysacc_synth_dom | UniProt:Q9LQ32 | TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI000005EBDC |
| SEG:seg | : | : | : | : | : |
Description
GXM3GXMT1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7W0]
Coordinates
chr1:+:12261165..12262750
Molecular Weight (calculated)
33672.0 Da
IEP (calculated)
6.990
GRAVY (calculated)
-0.463
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTKSPSSLN LKVIFIGSSI LILIIIYLAR SNISSSSSKP ISKTNLSQEE EETQHKQEGC PTTQQCTKMP LSLSDALVHY VTSNVTPQQT FDEVSVSKRV
101: LDKKSPCNFL VFGLGHDSLM WASLNHGGRT LFIEEDQAWI AIVTKKFPNL ESYHVVYDTK VKDSDKLMEL GRSEECRSVS DPRNSKCDLA LKDFPADFYE
201: TKWDLIMVDA PTGYHEEAPG RMSAIYTAGL LARNREDGET DVFVHDVNRP VEDEFSATFL CKGYMREQNG RLRHFTIPSH RARAGRPFCP VEVDRRR
101: LDKKSPCNFL VFGLGHDSLM WASLNHGGRT LFIEEDQAWI AIVTKKFPNL ESYHVVYDTK VKDSDKLMEL GRSEECRSVS DPRNSKCDLA LKDFPADFYE
201: TKWDLIMVDA PTGYHEEAPG RMSAIYTAGL LARNREDGET DVFVHDVNRP VEDEFSATFL CKGYMREQNG RLRHFTIPSH RARAGRPFCP VEVDRRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.