Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- endoplasmic reticulum 4
- extracellular 3
- golgi 3
- plasma membrane 4
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27638 | Canola | endoplasmic reticulum | 92.04 | 92.04 |
| CDX84898 | Canola | endoplasmic reticulum | 92.04 | 92.04 |
| Bra032854.1-P | Field mustard | endoplasmic reticulum | 92.04 | 92.04 |
| Bra030066.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 87.54 | 87.54 |
| AT1G67330.1 | Thale cress | endoplasmic reticulum, golgi | 66.78 | 66.32 |
| VIT_01s0010g03680.t01 | Wine grape | endoplasmic reticulum, golgi | 61.94 | 63.7 |
| KRH58773 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 60.55 | 63.18 |
| KRH42675 | Soybean | endoplasmic reticulum | 60.21 | 60.84 |
| VIT_14s0068g01970.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 59.17 | 60.64 |
| KRH31488 | Soybean | endoplasmic reticulum, golgi | 58.82 | 59.86 |
| PGSC0003DMT400084744 | Potato | endoplasmic reticulum | 53.98 | 55.32 |
| KRG97408 | Soybean | plastid | 60.21 | 54.38 |
| GSMUA_Achr3P19550_001 | Banana | mitochondrion | 53.98 | 54.36 |
| Solyc07g015920.1.1 | Tomato | extracellular | 49.83 | 52.36 |
| PGSC0003DMT400077009 | Potato | extracellular | 49.83 | 52.36 |
| GSMUA_Achr9P01430_001 | Banana | extracellular | 51.9 | 52.08 |
| HORVU3Hr1G108120.1 | Barley | extracellular, plasma membrane, vacuole | 49.48 | 48.97 |
| TraesCS3D01G492500.1 | Wheat | extracellular | 49.48 | 48.97 |
| TraesCS3B01G545900.1 | Wheat | extracellular | 49.48 | 48.81 |
| TraesCS2B01G398500.1 | Wheat | extracellular | 48.79 | 47.8 |
| TraesCS2D01G377700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 48.79 | 47.8 |
| TraesCS2A01G381200.1 | Wheat | extracellular | 48.44 | 47.46 |
| Zm00001d007327_P001 | Maize | plasma membrane | 49.83 | 46.91 |
| Os11t0490100-01 | Rice | plasma membrane | 47.4 | 45.36 |
| AT1G09610.1 | Thale cress | endoplasmic reticulum, golgi | 41.18 | 42.2 |
| HORVU2Hr1G089430.1 | Barley | endoplasmic reticulum, peroxisome, plastid | 48.1 | 40.88 |
| AT1G33800.1 | Thale cress | golgi, plasma membrane | 40.83 | 39.73 |
| AT1G71690.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 39.79 | 38.98 |
| AT4G09990.1 | Thale cress | golgi | 38.41 | 38.28 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 30.1 | 27.44 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 30.1 | 27.02 |
| AT2G15440.1 | Thale cress | plastid | 30.1 | 26.44 |
| AT4G24910.1 | Thale cress | plastid | 26.99 | 24.76 |
Protein Annotations
| MapMan:35.1 | EntrezGene:839686 | UniProt:A0A178WG29 | ProteinID:AAG51480.1 | ProteinID:AEE30892.1 | ArrayExpress:AT1G27930 |
| EnsemblPlantsGene:AT1G27930 | RefSeq:AT1G27930 | TAIR:AT1G27930 | RefSeq:AT1G27930-TAIR-G | EnsemblPlants:AT1G27930.1 | TAIR:AT1G27930.1 |
| EMBL:AY050385 | EMBL:AY085189 | EMBL:AY124820 | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008168 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 |
| GO:GO:0032259 | GO:GO:0045492 | InterPro:IRX15/IRX15L/IGXM | RefSeq:NP_564297.1 | ProteinID:OAP16413.1 | PFAM:PF04669 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF1 |
| InterPro:Polysacc_synth_dom | UniProt:Q9C7F9 | TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI000009D8BF | SEG:seg |
Description
Probable methyltransferase At1g27930 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7F9]
Coordinates
chr1:-:9730959..9733000
Molecular Weight (calculated)
32358.1 Da
IEP (calculated)
9.490
GRAVY (calculated)
-0.070
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTLIPSEKR WIITGVLLAG LVGGALLFTS FIRAADETLF LCSTASAKSR AVAAAADYEA TPIQLQAIVH YATSNVVPQQ NLAEISISFN ILKKLAPANF
101: LVFGLGRDSL MWASLNPRGK TLFLEEDLEW FQKVTKDSPF LRAHHVRYRT QLQQADSLLR SYKTEPKCFP AKSYLRGNEK CKLALTGLPD EFYDTEWDLL
201: MVDAPKGYFA EAPGRMAAIF SAAVMARNRK KPGVTHVFLH DVNRRVEKTF AEEFLCRKYR VNAAGRLWHF AIPPAAANAT IDSGDYRFC
101: LVFGLGRDSL MWASLNPRGK TLFLEEDLEW FQKVTKDSPF LRAHHVRYRT QLQQADSLLR SYKTEPKCFP AKSYLRGNEK CKLALTGLPD EFYDTEWDLL
201: MVDAPKGYFA EAPGRMAAIF SAAVMARNRK KPGVTHVFLH DVNRRVEKTF AEEFLCRKYR VNAAGRLWHF AIPPAAANAT IDSGDYRFC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.