Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96332 | Canola | endoplasmic reticulum, extracellular | 78.98 | 78.72 |
| Bra016131.1-P | Field mustard | endoplasmic reticulum, extracellular | 78.64 | 78.38 |
| CDX72815 | Canola | endoplasmic reticulum, extracellular | 78.31 | 76.74 |
| CDY37946 | Canola | extracellular | 65.42 | 72.83 |
| GSMUA_Achr8P29140_001 | Banana | endoplasmic reticulum, golgi | 53.22 | 56.27 |
| AT1G33800.1 | Thale cress | golgi, plasma membrane | 55.59 | 55.22 |
| Solyc11g031950.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 54.92 | 55.1 |
| VIT_00s0238g00020.t01 | Wine grape | extracellular, plasma membrane | 55.93 | 55.0 |
| AT4G09990.1 | Thale cress | golgi | 53.9 | 54.83 |
| AT1G09610.1 | Thale cress | endoplasmic reticulum, golgi | 51.86 | 54.26 |
| KRH64803 | Soybean | golgi, plasma membrane | 55.59 | 53.59 |
| PGSC0003DMT400080082 | Potato | endoplasmic reticulum, golgi | 55.93 | 53.57 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, golgi | 44.41 | 51.98 |
| TraesCS5A01G313000.1 | Wheat | mitochondrion | 51.19 | 50.5 |
| TraesCS5D01G319700.1 | Wheat | mitochondrion | 50.85 | 50.34 |
| HORVU5Hr1G080580.1 | Barley | endoplasmic reticulum, mitochondrion, plastid | 51.19 | 50.33 |
| TraesCS5B01G313900.1 | Wheat | golgi, unclear | 50.85 | 50.0 |
| TraesCS7A01G560100.1 | Wheat | mitochondrion, plastid | 50.85 | 49.67 |
| TraesCS7B01G485000.1 | Wheat | mitochondrion, plastid | 50.51 | 49.5 |
| Solyc06g064800.1.1 | Tomato | extracellular, golgi | 44.07 | 49.24 |
| TraesCS7D01G549800.1 | Wheat | mitochondrion, plastid | 50.85 | 49.02 |
| VIT_00s0238g00030.t01 | Wine grape | extracellular, plasma membrane | 40.0 | 48.76 |
| EES16857 | Sorghum | mitochondrion | 48.47 | 47.19 |
| Os12t0204500-01 | Rice | endoplasmic reticulum, golgi | 46.78 | 46.78 |
| HORVU7Hr1G120340.1 | Barley | plastid | 50.17 | 41.46 |
| TraesCS4B01G089200.1 | Wheat | mitochondrion | 44.07 | 40.25 |
| TraesCS4A01G227100.1 | Wheat | mitochondrion | 43.73 | 39.81 |
| AT1G27930.1 | Thale cress | endoplasmic reticulum, plasma membrane | 38.98 | 39.79 |
| TraesCS4D01G086700.1 | Wheat | mitochondrion | 43.39 | 39.26 |
| AT1G67330.1 | Thale cress | endoplasmic reticulum, golgi | 37.97 | 38.49 |
| HORVU4Hr1G015310.3 | Barley | endoplasmic reticulum, plastid | 43.05 | 35.88 |
| Os11t0242600-00 | Rice | mitochondrion | 37.29 | 34.81 |
| EES08266 | Sorghum | mitochondrion | 37.29 | 33.54 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 31.86 | 29.65 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 32.2 | 29.5 |
| AT2G15440.1 | Thale cress | plastid | 31.19 | 27.96 |
| AT4G24910.1 | Thale cress | plastid | 26.44 | 24.76 |
Protein Annotations
| MapMan:21.2.2.2.3 | EntrezGene:843495 | UniProt:A0A178WJV1 | ProteinID:AAG51814.1 | ProteinID:AEE35213.1 | EMBL:AK228612 |
| ArrayExpress:AT1G71690 | EnsemblPlantsGene:AT1G71690 | RefSeq:AT1G71690 | TAIR:AT1G71690 | RefSeq:AT1G71690-TAIR-G | EnsemblPlants:AT1G71690.1 |
| TAIR:AT1G71690.1 | Unigene:At.70348 | EMBL:BT012133 | EMBL:BT012405 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0032259 | GO:GO:0045492 |
| InterPro:IRX15/IRX15L/IGXM | RefSeq:NP_565020.1 | ProteinID:OAP18609.1 | PFAM:PF04669 | PO:PO:0001185 | PO:PO:0007616 |
| PO:PO:0009009 | PO:PO:0009052 | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF18 | InterPro:Polysacc_synth_dom | UniProt:Q9C9J1 |
| TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI00000A5B03 | SEG:seg | : | : |
Description
At1g71690 [Source:UniProtKB/TrEMBL;Acc:Q9C9J1]
Coordinates
chr1:+:26947754..26949248
Molecular Weight (calculated)
33476.0 Da
IEP (calculated)
7.048
GRAVY (calculated)
-0.316
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTYLPFPMT TRLILSSFVS LVVLTLFFIT RTGFSPSSSF HQPLNNTLRI STSSTGSKLQ SPRSCNKIPP SLADALVHYA SSNVTPQQTL SEISVTKKEL
101: EKKSPCNFLV FGLGHDSLMW ATLNHGGRTI FLDEDESWIH QIAEKFPSLE SYHVRYKTKV RDAEALMAAT KDREECRRVS TDLRVSTCEL ALKGLPEVVY
201: ETEWDLIMVD APTGFHEEAP GRMSAIYTAG MIARRRKDEE ETTAVFVHDV DRKVEDEFSM EFLCRDYMTK QEGRLRHFTV PSHRNYGVSG VKFCP
101: EKKSPCNFLV FGLGHDSLMW ATLNHGGRTI FLDEDESWIH QIAEKFPSLE SYHVRYKTKV RDAEALMAAT KDREECRRVS TDLRVSTCEL ALKGLPEVVY
201: ETEWDLIMVD APTGFHEEAP GRMSAIYTAG MIARRRKDEE ETTAVFVHDV DRKVEDEFSM EFLCRDYMTK QEGRLRHFTV PSHRNYGVSG VKFCP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.