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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 5
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid, vacuole
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:vacuole
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G331000.1
TraesCS2A01G346700.1
TraesCS2B01G351300.1
TraesCS2B01G365000.1
TraesCS2D01G332000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G33800.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT1G33800.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT1G33800.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT1G33800.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS2A01G331000.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS2B01G351300.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS2D01G332000.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS5A01G257000.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS5B01G256500.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS5D01G265600.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS7A01G240200.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS7B01G135800.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS7D01G238200.1 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G227100.1 Wheat mitochondrion 97.52 97.22
TraesCS4D01G086700.1 Wheat mitochondrion 97.83 96.93
HORVU4Hr1G015310.3 Barley endoplasmic reticulum, plastid 92.88 84.75
TraesCS7B01G485000.1 Wheat mitochondrion, plastid 58.82 63.12
TraesCS5B01G313900.1 Wheat golgi, unclear 57.28 61.67
Os11t0242600-00 Rice mitochondrion 57.59 58.86
EES08266 Sorghum mitochondrion 59.13 58.23
Zm00001d007269_P001 Maize mitochondrion, plastid 57.59 56.88
GSMUA_Achr8P29140_001 Banana endoplasmic reticulum, golgi 43.34 50.18
AT1G09610.1 Thale cress endoplasmic reticulum, golgi 40.87 46.81
KRH06044 Soybean endoplasmic reticulum, golgi, vacuole 40.56 46.79
CDY31075 Canola endoplasmic reticulum, golgi, plasma membrane 40.25 46.26
Solyc01g103360.2.1 Tomato plasma membrane 39.32 46.18
AT1G33800.1 Thale cress golgi, plasma membrane 42.41 46.13
CDY20685 Canola endoplasmic reticulum, golgi, plasma membrane 39.94 45.91
Bra030789.1-P Field mustard endoplasmic reticulum, golgi 39.94 45.91
AT4G09990.1 Thale cress golgi 41.18 45.86
VIT_12s0035g01340.t01 Wine grape golgi 40.25 45.77
VIT_12s0035g01170.t01 Wine grape endoplasmic reticulum, golgi, vacuole 40.87 45.52
CDX96332 Canola endoplasmic reticulum, extracellular 41.49 45.27
Bra016131.1-P Field mustard endoplasmic reticulum, extracellular 41.49 45.27
Solyc11g031950.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 41.18 45.24
KRH50678 Soybean cytosol 9.91 45.07
GSMUA_Achr10P... Banana endoplasmic reticulum, golgi 34.98 44.84
Bra034460.1-P Field mustard golgi, plasma membrane, vacuole 41.18 44.78
PGSC0003DMT400064018 Potato plasma membrane 38.08 44.57
CDX72815 Canola endoplasmic reticulum, extracellular 41.49 44.52
CDY48797 Canola golgi, plasma membrane 40.87 44.44
CDY15292 Canola golgi 40.56 44.26
CDX93751 Canola golgi 40.56 44.26
Bra028013.1-P Field mustard golgi 40.56 44.26
AT1G71690.1 Thale cress endoplasmic reticulum, golgi, plastid 40.25 44.07
VIT_00s0238g00020.t01 Wine grape extracellular, plasma membrane 40.87 44.0
PGSC0003DMT400080082 Potato endoplasmic reticulum, golgi 41.18 43.18
Solyc06g064800.1.1 Tomato extracellular, golgi 34.06 41.67
KRH64803 Soybean golgi, plasma membrane 39.01 41.18
CDY37946 Canola extracellular 33.13 40.38
TraesCS3B01G545900.1 Wheat extracellular 34.67 38.23
VIT_00s0238g00030.t01 Wine grape extracellular, plasma membrane 28.17 37.6
TraesCS2B01G398500.1 Wheat extracellular 33.44 36.61
KRH50677 Soybean mitochondrion 11.46 33.64
TraesCS1B01G382900.1 Wheat plasma membrane, vacuole 28.48 33.58
TraesCS2B01G540300.1 Wheat golgi 32.51 33.23
TraesCS7B01G341900.1 Wheat golgi, mitochondrion 34.98 33.04
TraesCS6B01G160200.1 Wheat mitochondrion 32.82 31.93
Protein Annotations
EnsemblPlants:TraesCS4B01G089200.1EnsemblPlantsGene:TraesCS4B01G089200GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0045492InterPro:IRX15/IRX15L/IGXMInterPro:Polysacc_synth_domPANTHER:PTHR31444PANTHER:PTHR31444:SF5
PFAM:PF04669SEG:segTIGRFAMs:TIGR01627TMHMM:TMhelixMapMan:21.2.2.2.3:
Description
No Description!
Coordinates
chr4B:-:90505721..90506692
Molecular Weight (calculated)
34269.0 Da
IEP (calculated)
8.163
GRAVY (calculated)
-0.104
Length
323 amino acids
Sequence
(BLAST)
001: MTSPTLARKA KLKNHLVSAK AKLRQHVTLR RIVLVAAASA AAFILLLTVR TLSASHARSP GAASSTTSPP EAVRRNTQQQ QGGCAKLPGP VAEALVHYAT
101: ANATLPQTAA EVGVTARLLA RRAPCNLLVF GGLSPDSALW AALNHGGRTA FLEEDAALIA EVGARHPGLG LESHQVAYQT TLADADELLG LRGSPDCTAS
201: PPKDHPLSPD HFEGSPCKLA MRGLPAAFYE TEWDVIMVDA PTGWVPEAPG RVGGAIYMAG MAARARRPGN GETEVLVHDV DRTVEDSFSR AFLCAGYLEE
301: EVGRLRRFAV PSHREKEGLP FCP
Best Arabidopsis Sequence Match ( AT1G09610.1 )
(BLAST)
001: MRPKANQNHK LKVLLVFLLA TLILIFIVRS TLTSSQEHQT PQETRSTRCS GACNKLPRSL AQALIHYSTS VITPQQTLKE IAVSSRVLGK KSPCNFLVFG
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP
Arabidopsis Description
GXM1GXM3 [Source:UniProtKB/TrEMBL;Acc:A0A178W7U8]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.