Factsheet for TraesCS1B01G382900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G365400.1	Wheat	golgi	96.72	96.01
TraesCS1D01G370900.1	Wheat	extracellular, plasma membrane	94.16	95.91
Zm00001d001763_P001	Maize	plasma membrane	75.55	73.67
OQU82596	Sorghum	plastid	75.91	70.27
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi	41.61	44.36
Solyc11g020540.1.1	Tomato	cytosol	10.22	41.79
GSMUA_Achr9P01440_001	Banana	golgi	36.5	38.17
Bra013845.1-P	Field mustard	cytosol	24.82	37.99
Solyc11g020470.1.1	Tomato	cytosol	17.52	31.79
KRH57238	Soybean	golgi	33.58	31.51
CDX92660	Canola	plastid	35.77	31.41
KRH63768	Soybean	plastid	33.21	31.16
TraesCS5B01G313900.1	Wheat	golgi, unclear	33.58	30.67
AT4G24910.1	Thale cress	plastid	35.04	30.48
KRH54181	Soybean	plastid	33.58	30.26
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	33.21	30.23
Bra019203.1-P	Field mustard	plastid	33.94	29.81
TraesCS3B01G545900.1	Wheat	extracellular	31.75	29.69
CDY03407	Canola	plastid	33.58	29.58
PGSC0003DMT400039556	Potato	golgi	28.83	29.37
KRH03967	Soybean	vacuole	35.4	29.31
CDY34323	Canola	plastid	32.48	28.8
TraesCS4B01G089200.1	Wheat	mitochondrion	33.58	28.48
TraesCS2B01G540300.1	Wheat	golgi	31.75	27.53
TraesCS2B01G398500.1	Wheat	extracellular	29.56	27.46
TraesCS6B01G160200.1	Wheat	mitochondrion	33.21	27.41
TraesCS7B01G341900.1	Wheat	golgi, mitochondrion	33.21	26.61
Solyc03g110890.1.1	Tomato	plasma membrane, vacuole	27.74	25.25
Os11t0488500-01	Rice	cytosol, nucleus	13.5	11.38

Protein Annotations

EnsemblPlants:TraesCS1B01G382900.1	EnsemblPlantsGene:TraesCS1B01G382900	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF7
PFAM:PF04669	SEG:seg	TIGRFAMs:TIGR01627	TMHMM:TMhelix	MapMan:35.1	:

Description

No Description!

Coordinates

chr1B:+:614970186..614971307

Molecular Weight (calculated)

28187.8 Da

IEP (calculated)

9.919

GRAVY (calculated)

0.112

Length

274 amino acids

Sequence
(BLAST)

001: MSPKQLLTTI LIVFSTLSFI KLMLLTHSAS SSPARPGRSA WDAGGSGNGT AGAATDGLNA KEFALLRSVV AARAPCGLLV FGLSPQLLAL AAVNDGQGAA
101: TAFVTDSAED AASARRVLAG RGPGGSAAVH RTTYQDPAGE AWALLRRARA SPVCGRPTGT VRKSGCRLAL TSLPREVLDA RWDVVVVDGP SGAGPGEPGR
201: MGAIYTAAAL ARAAGGGAVD VAVHNMNRTV ERWYAREYLC EDNLVAAKGR LWHFRVAAGG PPDAFCSTAP VQIL

Best Arabidopsis Sequence Match ( AT4G24910.1 )
(BLAST)

001: MPPQFHQSSL SILNPLLRFS PPSSPDNPKH QRLSTIKMPK FTVRKLIPLL IFVLSSLSVL RLLRISYKSS SKSQSSSSTT FRLSPADSSQ QLRANEGPTA
101: LMEKELKLLS DTVTRRSPCN ILVFGFAPQY LMLSSINTRG ITVILEDEPA KIMIPKAEVN PNNTRIYSLK YHQMEVRNAY NLLQHARANP ACAPNMNNQH
201: QGSSDCKLEL RDLPQQVHNT KWDVIVVDGP RGDDLETPGR MGSIYTAAVL ARKGSSNSTT DVFVHDVHRT AEKWLSWEFL CQENLVSAKG TFWKFRIKRQ
301: SNASRFCSPE TVIIR

Arabidopsis Description

Glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [Source:UniProtKB/TrEMBL;Acc:Q9SW35]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.