Factsheet for TraesCS6B01G160200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G015370.1	Barley	cytosol, extracellular	68.98	95.82
TraesCS6A01G131900.1	Wheat	mitochondrion	93.98	95.12
TraesCS6D01G121700.1	Wheat	mitochondrion	92.47	93.88
OQU84413	Sorghum	golgi, mitochondrion	72.59	75.31
Zm00001d015307_P001	Maize	golgi, mitochondrion, plastid	71.39	73.37
Os02t0158500-00	Rice	plastid	77.41	65.56
TraesCS7B01G341900.1	Wheat	golgi, mitochondrion	61.75	59.94
GSMUA_Achr9P25260_001	Banana	golgi	57.23	57.93
GSMUA_Achr6P29610_001	Banana	endoplasmic reticulum, golgi, plastid	53.92	54.91
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	47.29	54.51
GSMUA_Achr8P03360_001	Banana	golgi	53.31	53.96
VIT_03s0063g00030.t01	Wine grape	plastid	34.64	52.27
TraesCS2B01G540300.1	Wheat	golgi	49.1	51.58
PGSC0003DMT400066571	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	42.77	45.22
VIT_07s0031g00110.t01	Wine grape	golgi	42.17	45.16
PGSC0003DMT400065494	Potato	golgi, plasma membrane, plastid	40.96	45.03
KRH50341	Soybean	golgi, plastid	42.17	45.02
Solyc01g107800.2.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	41.87	44.27
PGSC0003DMT400064322	Potato	plastid	40.96	44.16
KRH77040	Soybean	mitochondrion	40.36	44.08
AT5G67210.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	41.87	43.85
Solyc02g093090.1.1	Tomato	extracellular, nucleus	40.66	43.83
KRH70689	Soybean	plastid	42.47	43.65
CDX81329	Canola	plastid	40.36	43.51
KRH28432	Soybean	mitochondrion	40.06	43.18
Bra012143.1-P	Field mustard	plastid	40.96	43.17
CDY12819	Canola	golgi, mitochondrion, plasma membrane, plastid	40.66	42.86
CDY01429	Canola	golgi, mitochondrion, plasma membrane, plastid	40.36	42.54
KRH57814	Soybean	mitochondrion	40.36	42.41
AT3G50220.1	Thale cress	endoplasmic reticulum, golgi	40.96	42.24
CDY30600	Canola	endoplasmic reticulum, golgi	40.96	41.98
CDY17753	Canola	endoplasmic reticulum, golgi	40.96	41.98
Bra036059.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	40.96	41.98
KRH04549	Soybean	plastid	39.46	41.59
Bra039840.1-P	Field mustard	plastid	38.25	39.08
CDY62313	Canola	plastid	37.05	38.44
CDY13145	Canola	plastid	37.95	38.41
Bra013107.1-P	Field mustard	plastid	37.95	38.41
CDY37228	Canola	plastid	37.05	38.08
CDX89660	Canola	plastid	37.95	38.07
AT2G15440.1	Thale cress	plastid	36.75	37.08
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	31.63	34.88
TraesCS5B01G313900.1	Wheat	golgi, unclear	31.33	34.67
TraesCS2B01G398500.1	Wheat	extracellular	29.52	33.22
TraesCS1B01G382900.1	Wheat	plasma membrane, vacuole	27.41	33.21
TraesCS3B01G545900.1	Wheat	extracellular	29.22	33.11
TraesCS4B01G089200.1	Wheat	mitochondrion	31.93	32.82

Protein Annotations

EnsemblPlants:TraesCS6B01G160200.1	EnsemblPlantsGene:TraesCS6B01G160200	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF19
PFAM:PF04669	SEG:seg	TIGRFAMs:TIGR01627	TMHMM:TMhelix	MapMan:35.1	:

Description

No Description!

Coordinates

chr6B:-:164034011..164035009

Molecular Weight (calculated)

34841.4 Da

IEP (calculated)

7.431

GRAVY (calculated)

0.093

Length

332 amino acids

Sequence
(BLAST)

001: MKAMSGTKLL LVRQPSSKYG NGAVSPATAT SISWRRFWLV AFLALFTCAS LLTVFSTARA PSGAASPGVT FVAAGVGAGS VGGASAGGGA LPAYVFDALV
101: RYAAAAGANS TVSMPEEDVR AIASVLRRRA PCNLLVFGLG AETPLWRALN HGGRTVFLDE NPFYVAHMEG AHGGLEAYDV AYATAVRELP DLLDTARASR
201: RAECRPVQNL LFSDCSLAIG DLPNQLYDVA WDVILVDGPH GYAEGSPGRM AAIYSSAVMA RTKGTVTDVL VHDYEREVES VCAREFLCDE NRVEGTTTPS
301: LGHYIVRGGA AANREAFCGA QKPAGSTTKK AN

Best Arabidopsis Sequence Match ( AT3G50220.1 )
(BLAST)

001: MKNGSGNTNT KLILLHPYIQ KQTSTTRLWL LAFVSFFTIV FLLTLLYTRD TIPSKNTSVA AAVAAVVTGG STPSASSPIS NSNLPTSAIN ALLHYASRSN
101: DSFHMSYGEM KSISDVLRRC APPCNLLVFG LTHETLLWKS LNHNGRTVFI EENRYYAAYF EEIHPEIDVF DVQYTTKAHE AGELVTAAKE AAGNECRPVQ
201: NLLFSDCKLG LNDLPNHVYD VDWDVIFVDG PRGDAHEGPG RMSSIFTAAV LARSKKGGTP KTHVFVHDYY RDVERLCGDE FLCRENLVES NDLLAHYVLD
301: KMDKNSTKFC NGRKKRSVSS LS

Arabidopsis Description

IRX15Protein IRREGULAR XYLEM 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNE5]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.