Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400071510 | |
| PGSC0003DMT400073246 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G67210.1 | PGSC0003DMT400071510 | AT4G19030.1 | 21798944 |
| AT5G67210.1 | PGSC0003DMT400073246 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064322 | Potato | plastid | 84.11 | 82.47 |
| VIT_07s0031g00110.t01 | Wine grape | golgi | 71.19 | 69.35 |
| KRH77040 | Soybean | mitochondrion | 69.21 | 68.75 |
| KRH28432 | Soybean | mitochondrion | 67.55 | 66.23 |
| KRH57814 | Soybean | mitochondrion | 67.88 | 64.87 |
| KRH04549 | Soybean | plastid | 67.22 | 64.44 |
| Bra012143.1-P | Field mustard | plastid | 63.24 | 60.63 |
| CDY12819 | Canola | golgi, mitochondrion, plasma membrane, plastid | 63.24 | 60.63 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 63.58 | 60.57 |
| CDX81329 | Canola | plastid | 61.59 | 60.39 |
| CDY01429 | Canola | golgi, mitochondrion, plasma membrane, plastid | 62.91 | 60.32 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 62.91 | 59.01 |
| Bra036059.1-P | Field mustard | endoplasmic reticulum, golgi, plastid | 62.58 | 58.33 |
| CDY30600 | Canola | endoplasmic reticulum, golgi | 62.58 | 58.33 |
| CDY17753 | Canola | endoplasmic reticulum, golgi | 62.58 | 58.33 |
| PGSC0003DMT400066571 | Potato | endoplasmic reticulum, golgi, mitochondrion, plastid | 55.96 | 53.82 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 38.41 | 48.54 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 45.7 | 47.92 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 51.66 | 47.56 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 50.33 | 46.34 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 49.01 | 45.4 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 45.03 | 45.18 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 46.03 | 43.99 |
| TraesCS2A01G512400.1 | Wheat | golgi | 46.03 | 43.99 |
| OQU84413 | Sorghum | golgi, mitochondrion | 46.36 | 43.75 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 46.69 | 43.65 |
| Zm00001d014532_P001 | Maize | plasma membrane | 46.36 | 43.61 |
| TraesCS2B01G540300.1 | Wheat | golgi | 45.36 | 43.35 |
| EER88850 | Sorghum | plastid | 47.02 | 42.77 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 46.03 | 42.51 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 46.03 | 42.38 |
| Os06t0687600-00 | Rice | golgi | 47.02 | 42.26 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 45.36 | 41.9 |
| Os04t0649900-01 | Rice | mitochondrion | 44.04 | 41.82 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 47.35 | 41.81 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 46.69 | 41.59 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 46.69 | 41.35 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 45.03 | 40.96 |
| Zm00001d002066_P001 | Maize | plasma membrane | 45.36 | 40.9 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 44.37 | 39.53 |
| Os02t0158500-00 | Rice | plastid | 44.7 | 34.44 |
| PGSC0003DMT400084744 | Potato | endoplasmic reticulum | 31.13 | 33.33 |
| PGSC0003DMT400064018 | Potato | plasma membrane | 30.46 | 33.33 |
| PGSC0003DMT400080082 | Potato | endoplasmic reticulum, golgi | 32.78 | 32.14 |
| PGSC0003DMT400077009 | Potato | extracellular | 28.48 | 31.27 |
| PGSC0003DMT400039556 | Potato | golgi | 26.16 | 29.37 |
Protein Annotations
| EntrezGene:102589163 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045492 | InterPro:IRX15/IRX15L/IGXM |
| UniProt:M1CE35 | PFAM:PF04669 | EnsemblPlantsGene:PGSC0003DMG400025474 | PGSC:PGSC0003DMG400025474 | EnsemblPlants:PGSC0003DMT400065494 | PANTHER:PTHR31444 |
| PANTHER:PTHR31444:SF8 | InterPro:Polysacc_synth_dom | TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI0002965C7C | RefSeq:XP_006360212.1 |
| SEG:seg | : | : | : | : | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025474]
Coordinates
chr2:-:23415952..23417262
Molecular Weight (calculated)
34639.6 Da
IEP (calculated)
8.539
GRAVY (calculated)
-0.260
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNNIGNNTK LILLHPYIQK QGTSYRLWVL AFISFLTIAF LLTLIYTRES FTTSSVAAVS SITASTNPPL SKAVVRALTH YASNSNNTER MSYTDIKQIA
101: DVLRQCQQPC NLLVFGLTHE TLLWKALNHN GRTVFIDENR YYAAYIEEKY PEIEAYDVQY TTKLSEMKEL IGAVKEQIRN ECKPVQNLLF SECKLGINDL
201: PNQFYEVNWD VILVDGPRGY WPEAPGRMSA IFTAGVLARS KKFGNPKTHV FVHDFNQKVD RITSEEFLCK ENLVNNSKDM LGHFVIGRMD PNSYTFCRRN
301: HI
101: DVLRQCQQPC NLLVFGLTHE TLLWKALNHN GRTVFIDENR YYAAYIEEKY PEIEAYDVQY TTKLSEMKEL IGAVKEQIRN ECKPVQNLLF SECKLGINDL
201: PNQFYEVNWD VILVDGPRGY WPEAPGRMSA IFTAGVLARS KKFGNPKTHV FVHDFNQKVD RITSEEFLCK ENLVNNSKDM LGHFVIGRMD PNSYTFCRRN
301: HI
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Arabidopsis Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.