Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G67210.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT5G67210.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT5G67210.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT5G67210.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012143.1-P | Field mustard | plastid | 98.41 | 98.41 |
| CDY01429 | Canola | golgi, mitochondrion, plasma membrane, plastid | 98.41 | 98.41 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 92.06 | 91.48 |
| CDX81329 | Canola | plastid | 89.21 | 91.23 |
| CDY30600 | Canola | endoplasmic reticulum, golgi | 82.54 | 80.25 |
| CDY17753 | Canola | endoplasmic reticulum, golgi | 82.54 | 80.25 |
| KRH77040 | Soybean | mitochondrion | 64.44 | 66.78 |
| VIT_07s0031g00110.t01 | Wine grape | golgi | 65.08 | 66.13 |
| KRH28432 | Soybean | mitochondrion | 64.13 | 65.58 |
| KRH04549 | Soybean | plastid | 65.4 | 65.4 |
| KRH57814 | Soybean | mitochondrion | 65.08 | 64.87 |
| PGSC0003DMT400064322 | Potato | plastid | 62.86 | 64.29 |
| PGSC0003DMT400065494 | Potato | golgi, plasma membrane, plastid | 60.63 | 63.24 |
| Solyc02g093090.1.1 | Tomato | extracellular, nucleus | 61.59 | 62.99 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 36.51 | 48.12 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 48.25 | 46.34 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 41.9 | 45.83 |
| CDY62313 | Canola | plastid | 46.35 | 45.62 |
| CDY13145 | Canola | plastid | 46.98 | 45.12 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 46.67 | 45.09 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 42.86 | 44.85 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 46.67 | 44.82 |
| CDX89660 | Canola | plastid | 46.98 | 44.71 |
| TraesCS2A01G512400.1 | Wheat | golgi | 44.44 | 44.3 |
| CDY37228 | Canola | plastid | 45.4 | 44.27 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 44.13 | 43.99 |
| OQU84413 | Sorghum | golgi, mitochondrion | 44.44 | 43.75 |
| Zm00001d014532_P001 | Maize | plasma membrane | 44.44 | 43.61 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 44.44 | 43.34 |
| TraesCS2B01G540300.1 | Wheat | golgi | 43.17 | 43.04 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 44.44 | 42.68 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 43.49 | 41.9 |
| EER88850 | Sorghum | plastid | 44.13 | 41.87 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 45.4 | 41.81 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 44.76 | 41.59 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 44.76 | 41.35 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 42.86 | 41.28 |
| Os04t0649900-01 | Rice | mitochondrion | 41.27 | 40.88 |
| Os06t0687600-00 | Rice | golgi | 43.49 | 40.77 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 42.86 | 40.66 |
| Zm00001d002066_P001 | Maize | plasma membrane | 42.54 | 40.0 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 41.9 | 38.94 |
| CDX96332 | Canola | endoplasmic reticulum, extracellular | 32.06 | 34.12 |
| Os02t0158500-00 | Rice | plastid | 41.27 | 33.16 |
| CDY20685 | Canola | endoplasmic reticulum, golgi, plasma membrane | 28.89 | 32.38 |
| CDX72815 | Canola | endoplasmic reticulum, extracellular | 30.79 | 32.23 |
| CDY31075 | Canola | endoplasmic reticulum, golgi, plasma membrane | 28.57 | 32.03 |
| CDY48797 | Canola | golgi, plasma membrane | 28.89 | 30.64 |
| CDY12639 | Canola | endoplasmic reticulum, golgi | 27.94 | 30.56 |
| CDX93751 | Canola | golgi | 28.57 | 30.41 |
| CDY15292 | Canola | golgi | 28.57 | 30.41 |
| CDY28894 | Canola | endoplasmic reticulum, golgi | 27.94 | 30.24 |
| CDX84898 | Canola | endoplasmic reticulum | 27.62 | 30.1 |
| CDY27638 | Canola | endoplasmic reticulum | 27.62 | 30.1 |
| CDY07428 | Canola | endoplasmic reticulum, golgi | 27.62 | 29.9 |
| CDY51186 | Canola | endoplasmic reticulum, plasma membrane | 27.3 | 29.15 |
| CDY37946 | Canola | extracellular | 24.13 | 28.68 |
| CDY03407 | Canola | plastid | 27.62 | 27.97 |
| CDY34323 | Canola | plastid | 27.3 | 27.83 |
| CDX92660 | Canola | plastid | 26.35 | 26.6 |
Protein Annotations
| MapMan:35.1 | GO:A0A078FIK5 | UniProt:A0A078FIK5 | EnsemblPlants:CDY12819 | ProteinID:CDY12819 | ProteinID:CDY12819.1 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045492 | EnsemblPlantsGene:GSBRNA2T00070450001 | InterPro:IRX15/IRX15L/IGXM | PFAM:PF04669 |
| PANTHER:PTHR31444 | PANTHER:PTHR31444:SF8 | InterPro:Polysacc_synth_dom | TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI0004EAC808 |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g16140DBnaC07g16140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIK5]
Coordinates
chrLK032027:+:379548..380495
Molecular Weight (calculated)
35598.2 Da
IEP (calculated)
7.592
GRAVY (calculated)
-0.294
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSGGNTNTK LILVHPYIQK QTSSNRLWLL AFVSFFTIAF LLTLLYTTDT IISSKNSSVV SSVVNSAVSN TPTSQLPTSA INALLHYASR SNDSFHMSYG
101: EMKSISDVLR RCAPPCNLLV FGLTHETLLW KSLNHNGRTV YIEENRYYAA YFEEIHPEIE VFDVQYTTKA REARELVSAV KEAARNECRP VQNLLFSDCK
201: LGLNDLPNHV YDLDWDVILV DGPRGDGGDV PGRMSSIFTA AVLARSKKSG GNHKTHVFVH DYYREIERLC GDEFLCRENL VESNDMLAHY VLERMDKNST
301: HFCRDRKKRS ASPSA
101: EMKSISDVLR RCAPPCNLLV FGLTHETLLW KSLNHNGRTV YIEENRYYAA YFEEIHPEIE VFDVQYTTKA REARELVSAV KEAARNECRP VQNLLFSDCK
201: LGLNDLPNHV YDLDWDVILV DGPRGDGGDV PGRMSSIFTA AVLARSKKSG GNHKTHVFVH DYYREIERLC GDEFLCRENL VESNDMLAHY VLERMDKNST
301: HFCRDRKKRS ASPSA
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Arabidopsis Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.