Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- extracellular 2
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G67210.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P03360_001 | Banana | golgi | 81.25 | 71.34 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 76.04 | 66.77 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 69.1 | 61.04 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 44.44 | 53.56 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 55.9 | 49.09 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 55.21 | 48.62 |
| Zm00001d014532_P001 | Maize | plasma membrane | 53.82 | 48.29 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 50.0 | 47.84 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 54.51 | 47.29 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 51.74 | 47.15 |
| OQU84413 | Sorghum | golgi, mitochondrion | 52.08 | 46.88 |
| TraesCS2B01G540300.1 | Wheat | golgi | 51.39 | 46.84 |
| VIT_03s0063g00030.t01 | Wine grape | plastid | 35.76 | 46.82 |
| TraesCS2A01G512400.1 | Wheat | golgi | 51.04 | 46.52 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 52.08 | 46.44 |
| EER88850 | Sorghum | plastid | 53.47 | 46.39 |
| KRH77040 | Soybean | mitochondrion | 48.26 | 45.72 |
| PGSC0003DMT400065494 | Potato | golgi, plasma membrane, plastid | 47.92 | 45.7 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 53.82 | 45.45 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 53.47 | 45.43 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 53.47 | 45.03 |
| Os06t0687600-00 | Rice | golgi | 52.43 | 44.94 |
| VIT_07s0031g00110.t01 | Wine grape | golgi | 48.26 | 44.84 |
| PGSC0003DMT400064322 | Potato | plastid | 47.57 | 44.48 |
| KRH28432 | Soybean | mitochondrion | 47.22 | 44.16 |
| Solyc02g093090.1.1 | Tomato | extracellular, nucleus | 46.88 | 43.83 |
| KRH50341 | Soybean | golgi, plastid | 46.88 | 43.41 |
| Os04t0649900-01 | Rice | mitochondrion | 47.92 | 43.4 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 48.61 | 42.81 |
| PGSC0003DMT400066571 | Potato | endoplasmic reticulum, golgi, mitochondrion, plastid | 46.53 | 42.68 |
| CDX81329 | Canola | plastid | 45.49 | 42.53 |
| KRH70689 | Soybean | plastid | 47.57 | 42.41 |
| Solyc01g107800.2.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion, plastid | 46.18 | 42.36 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 49.65 | 42.18 |
| CDY30600 | Canola | endoplasmic reticulum, golgi | 47.22 | 41.98 |
| CDY17753 | Canola | endoplasmic reticulum, golgi | 47.22 | 41.98 |
| Bra036059.1-P | Field mustard | endoplasmic reticulum, golgi, plastid | 47.22 | 41.98 |
| CDY12819 | Canola | golgi, mitochondrion, plasma membrane, plastid | 45.83 | 41.9 |
| Zm00001d002066_P001 | Maize | plasma membrane | 48.61 | 41.79 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 45.83 | 41.64 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 46.53 | 41.61 |
| Bra012143.1-P | Field mustard | plastid | 45.49 | 41.59 |
| CDY01429 | Canola | golgi, mitochondrion, plasma membrane, plastid | 45.14 | 41.27 |
| KRH04549 | Soybean | plastid | 44.44 | 40.63 |
| KRH57814 | Soybean | mitochondrion | 44.44 | 40.51 |
| Os02t0158500-00 | Rice | plastid | 53.47 | 39.29 |
| Bra013107.1-P | Field mustard | plastid | 43.06 | 37.8 |
| CDY13145 | Canola | plastid | 42.71 | 37.5 |
| CDX89660 | Canola | plastid | 42.01 | 36.56 |
| Bra039840.1-P | Field mustard | plastid | 40.62 | 36.0 |
| CDY62313 | Canola | plastid | 39.93 | 35.94 |
| CDY37228 | Canola | plastid | 39.93 | 35.6 |
| AT2G15440.1 | Thale cress | plastid | 40.62 | 35.56 |
| GSMUA_Achr8P29140_001 | Banana | endoplasmic reticulum, golgi | 30.56 | 31.54 |
| GSMUA_Achr9P01440_001 | Banana | golgi | 27.08 | 29.77 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, golgi | 25.69 | 29.37 |
| GSMUA_Achr9P01430_001 | Banana | extracellular | 28.82 | 28.82 |
| GSMUA_Achr3P19550_001 | Banana | mitochondrion | 28.47 | 28.57 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular, golgi | 25.0 | 28.02 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P08980_001 | EnsemblPlants:GSMUA_Achr10T08980_001 | EnsemblPlantsGene:GSMUA_Achr10G08980_001 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045492 |
| InterPro:IRX15/IRX15L/IGXM | InterPro:Polysacc_synth_dom | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF0 | PFAM:PF04669 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000295344E | UniProt:M0RGM4 | MapMan:35.1 | : | : |
Description
Putative plant-specific domain TIGR01627 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G08980_001]
Coordinates
chr10:-:19000551..19001534
Molecular Weight (calculated)
30483.3 Da
IEP (calculated)
7.854
GRAVY (calculated)
0.161
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGFSSTKLI FLQPSSTNKQ GSGNGITTSI SILVSHHHRV WLIAFLTFFT FASLLTLLNT TTGRGLNGLA SSTSSASAVT SSSSVSSGPS PLPAPVYDAL
101: VNYAVSSNST GKMTEGDLRA IAAVLRQRGP CNLLVFGIGH ETPLWRALNH GGRTVFVDEN EYYCRPVQNL LFSDCPLAIN DLPNQLYDVA WDVILVDGPK
201: GFSAAEPGRM SAIFTAAVMA RSSARAPVDV LVHDYTRKVE KLCSAEFLCP DNLVAATRSL GHFLIGGGPA DVFCANQTAT APLASPTS
101: VNYAVSSNST GKMTEGDLRA IAAVLRQRGP CNLLVFGIGH ETPLWRALNH GGRTVFVDEN EYYCRPVQNL LFSDCPLAIN DLPNQLYDVA WDVILVDGPK
201: GFSAAEPGRM SAIFTAAVMA RSSARAPVDV LVHDYTRKVE KLCSAEFLCP DNLVAATRSL GHFLIGGGPA DVFCANQTAT APLASPTS
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Arabidopsis Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.